FC868670

Overview
NameFC868670
Unique NameFC868670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868670_ssr6 microsatellite FC868670_ssr6:6..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9463 contig Ccv1_Contig9463:76..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 69/159 (43.40%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  210 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            K  ++++PSI+ A+ A LG+  + +E +G + IH+DVMDG FVPNIT GP ++ A+   TDL L+VH MI  P + V  F+KAGAD + VH E +   +L   L+ I+  G +AG+  +P TS+  I   + + D++L+MSV PGF GQ FI   ++KI
Sbjct:    3 KQGVLIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE--NLKEILDYIRKCGVQAGIAFSPETSIEFISAFIPLCDVILLMSVQPGFCGQKFIPDTIEKI 159          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 70/165 (42.42%), Postives = 105/165 (63.64%), Query Frame = 3
Query:  192 RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            R +   K  ++V+PSI+ A+ A +G + + +E +G D IH+DVMDG FVPNIT GP VV A+   T+L L+VH MI  P + V  F+KAGAD + VH E +  I     ++ I+  G +AGV  +P TS+  +   + + D++L+MSV+PGF GQ FI   +++I
Sbjct:    2 REEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENI--KEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDTIERI 164          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_MYCTU (Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 72/155 (46.45%), Postives = 101/155 (65.16%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I+  GAKAG+ + P T L     +L   D +L+MSV PGFGGQ FI   + K+
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKV 159          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_MYCBO (Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis GN=rpe PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 72/155 (46.45%), Postives = 101/155 (65.16%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I+  GAKAG+ + P T L     +L   D +L+MSV PGFGGQ FI   + K+
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKV 159          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_CHLPN (Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 68/159 (42.77%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  210 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            +  ++V PSI+ A+   LG + K +E AG D+IH+D+MDG FVPN+T GP ++ A+   TDL L+VH MI  P + +  F+++GAD + VH E S  I     L+ IK  G +AG+  +P TS+  +   L   D+V++MSV PGF GQSF+ + ++KI
Sbjct:    4 QESVLVGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRSTDLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASEDI--KELLSYIKKCGVQAGLAFSPDTSIEFLPSFLPFCDVVVLMSVYPGFTGQSFLPNTIEKI 160          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 72/158 (45.57%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            ++S S+LSANF++LGE +  V  +G D IH DVMD  +V N+T GP+V+++LR V  +    +DVHLM    +  +  F K   +I+S H E  ST ++ +T+  IK  G K G+ LNP T L  ++ VLD +DL+L+MSVNPGF GQ FI S + KI
Sbjct:    5 LLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE--STNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVLDKIDLILLMSVNPGFPGQKFIPSILNKI 160          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_HELPY (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori GN=rpe PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 69/153 (45.10%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 683
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP+V++ +  ++ +PLDVHLM+         F      I+S+H E     H HR L  IK+LG   G+VLNP T   +I+ +L+ V LVL+MSVNPGFGGQ F++  ++K
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAENEK--HPHRVLQLIKNLGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEK 151          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_HELPJ (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori J99 GN=rpe PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 683
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP++++ +  ++ +PLDVHLM+      V  F      I+S+H E     H HR L  IK  G   G+VLNP T   +I+ +L+ V LVL+MSVNPGFGGQ F++  ++K
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEK 151          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_MYCLE (Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae GN=rpe PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.495e-30
Identity = 70/155 (45.16%), Postives = 101/155 (65.16%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            +++PSIL+A+FA+L ++   V  A  DW+HVDVMDG FVPN+TIG  VV +L   +D+P+D HLMI  P++  P + +AGA  V+ H E  +T +     + I+  GAKAG+ + P T L+    +L   D +LIMSV PGFGGQ+FI   + K+
Sbjct:    4 LIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKV 154          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 3
Query:  219 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            I +  SILSA+F  L E++K  E AG D+ HVD+MDG FVPNI++G  +   ++ +T+LP++VHLM+   +  V +F +   D ++ H E  +     R +N+IK +GAK  V LNPAT L AIE +L  V  VL+M+V PGF GQ FI    KKI
Sbjct:    2 IKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE--MDYITFHIE--AVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKI 153          
The following BLAST results are available for this feature:
BLAST of FC868670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_CHLMU2.859e-3243.40Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]
RPE_CHLTR3.734e-3242.42Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]
RPE_MYCTU1.086e-3146.45Ribulose-phosphate 3-epimerase OS=Mycobacterium tu... [more]
RPE_MYCBO1.086e-3146.45Ribulose-phosphate 3-epimerase OS=Mycobacterium bo... [more]
RPE_CHLPN1.086e-3142.77Ribulose-phosphate 3-epimerase OS=Chlamydia pneumo... [more]
RPE_BUCBP3.161e-3145.57Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_HELPY5.392e-3145.10Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_HELPJ9.197e-3144.44Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_MYCLE3.495e-3045.16Ribulose-phosphate 3-epimerase OS=Mycobacterium le... [more]
RPE_METJA1.918e-2845.51Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionC31003C09EF AbioticL1 Citrus clementina cDNA clone C31003C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868670 ID=FC868670; Name=FC868670; organism=Citrus clementina; type=EST; length=687bp
GGGGAAGAGAGAGAGTTTGAAGATCGTGAAACAAAAAAAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGGGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GGGCAAAGCTTTATTGAGAGCCAAGTAAAAAAAATCT
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