FC868672

Overview
NameFC868672
Unique NameFC868672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+
Sbjct:   73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 170          

HSP 2 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   17 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRVSNI*NT 226
            +LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ + +  NT
Sbjct:   10 RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +G+G+ +G++
Sbjct:   74 IRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGQGVQDGMN 171          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L  G+D
Sbjct:   73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGID 170          

HSP 2 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 199
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQ 70          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP WR+YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++
Sbjct:   74 IRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 171          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L  G+D
Sbjct:   73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGID 170          

HSP 2 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 199
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQ 70          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++
Sbjct:   74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 171          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+R  HW IQ   A +GE L  G+D
Sbjct:   73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGID 170          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 28/57 (49.12%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 199
            ++++R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ
Sbjct:   14 ERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQ 70          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+R  HW IQ   A +GE L  G+D
Sbjct:   73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGID 170          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 199
            ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQ 70          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP W++YF+NT  LI+V+DS DR R  E   EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++
Sbjct:   74 IRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 171          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 43/98 (43.88%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  W  Y+ NTQ +I V+DS DR RV   ++EL +ML  + L+ +++L++ANKQDL +AM+  E++  L LHS++   ++IQ+ CA +G+GL  GLD
Sbjct:   77 LRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLD 174          

HSP 2 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 2
Query:    8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRVSNI*NTKISPPKSFFNFIELSTYYVILI 292
            ++++ F   E ++++VGL+AAGKTT LYKL L E+V+T PT+G N+E   Y+NI   +WD+GGQD +           +S +N   ++T  VIL+
Sbjct:   11 IWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLL-----------RSTWNQYYINTQAVILV 94          
The following BLAST results are available for this feature:
BLAST of FC868672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
ARL5A_BOVIN7.066e-2147.96ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL3_XENLA7.066e-2148.98ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARL2_BOVIN7.066e-2148.98ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL3_PIG9.228e-2150.00ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL2_HUMAN1.205e-2048.98ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL3_MOUSE1.574e-2050.00ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL2_RAT1.574e-2048.98ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL2_MOUSE1.574e-2048.98ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL3_HUMAN2.056e-2048.98ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL5_DICDI7.812e-2043.88ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionC31003C12EF AbioticL1 Citrus clementina cDNA clone C31003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868672 ID=FC868672; Name=FC868672; organism=Citrus clementina; type=EST; length=711bp
CACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAATTCTTA
TGGTTGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAGCTTAAG
TTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGTGGAGAC
TGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAGGTCAAG
ACAGGGTAAGCAACATATAGAACACTAAGATTTCCCCTCCAAAATCTTTC
TTTAATTTTATTGAACTATCAACATATTACGTAATTTTAATACATTCAAT
AAGTTTTTGCCTTTTAAAATCTCATTTTAATTCTTTTGGACATTTGTTTT
CCTTATGGTTTCAGTTTTGTTTTCAAAAGTTGTGTGCTAAACTGTCATGT
TGACCTCTTATTTTAGATTCGACCTTTGTGGAGACACTATTTTCAAAATA
CACAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTT
GAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGA
TGCTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGA
ATGCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGT
CACTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGCTCTACGA
GGGACTAGACT
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