FC868740

Overview
NameFC868740
Unique NameFC868740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:30..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.242e-57
Identity = 106/197 (53.81%), Postives = 143/197 (72.59%), Query Frame = 1
Query:  118 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            V  RGGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD  GP L++++PHGS   LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI +GI
Sbjct:    6 VEHRGGFSFENCQRNASLEHVLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGI 202          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.816e-56
Identity = 106/191 (55.50%), Postives = 143/191 (74.87%), Query Frame = 1
Query:  133 GFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 705
            G SFD  +RN+ LA+     P    TGTTIVG+ F +GV++ ADTR+T+GPIV DKNC K+H ++P I+C GAGTAADTEAVT ++ S ++LH  +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD   + ++GSGSLAAMA+ ES +K+ LTK+E I+L  DAI +GI+
Sbjct:    3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIW 193          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.098e-56
Identity = 106/197 (53.81%), Postives = 141/197 (71.57%), Query Frame = 1
Query:  118 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            V   GGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+LV+GGVD  GP L+ ++PHGS   LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI +GI
Sbjct:    6 VEPTGGFSFENCQRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGI 202          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.046e-56
Identity = 106/192 (55.21%), Postives = 138/192 (71.88%), Query Frame = 1
Query:  133 GFSFDLCRRNDML--AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            GFSF+ C RN  L  A  G+ +P  RKTGTTI GL+FQDGVILGADTRAT   +V DK CEKIH++AP IYCCGAG AAD E  T M +S ++LH   TGRE RV T   +L++ LF YQGYV A+L++GGVD TGP L++++PHGS   LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI +GI
Sbjct:   11 GFSFENCERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGI 202          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.804e-38
Identity = 82/166 (49.40%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            KTGTTIVG+ ++ GVIL ADTR+T+GP+V DKNC KIH +   I CCGAGTAAD   V  M S +L+L +    R   V     +  +HL  Y G + AAL++GG+D  G HL+ I+PHGS ++  F ++GSGSL A+A  ES+Y+  + KDE I L  DA+ +GI
Sbjct:    4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVARMASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLESRYR-AMDKDEAIDLACDAVKAGI 168          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 59/174 (33.91%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  184 VNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            +NL +    GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  +  L++   +N +  +   L++GG D   G  ++ I   G+    PFA  GSGS      F+  +K+ +TK+E  QLVV A+   I
Sbjct:    3 LNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAI 176          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  A  L +   +N +  +   +++GG D   G  ++ I P G+    PFA  GSGS      F+  +KEG+T++E  +LVV A+   I
Sbjct:   13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAI 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 54/163 (33.13%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            + GTTI  L ++DGVIL AD+R T G  + ++  +K+  +  NI+CC +G+AADT+ V D++   L ++R   G +  V TA TL  +  +  +  + A L++ G D  TG  +++I   GS    P A  GSGS       ++ ++E +T++E ++ + +A+
Sbjct:   22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAV 184          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 57/162 (35.19%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G     PFA  GSGS       ++ Y+EG+TK+E +Q   +A+
Sbjct:   33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 194          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 57/162 (35.19%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TKDE +Q   +A+
Sbjct:   32 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 193          
The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PSB10_RAT6.242e-5753.81Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB7_YEAST1.816e-5655.50Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB10_MOUSE3.098e-5653.81Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN4.046e-5655.21Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB7_ENCCU3.804e-3849.40Probable proteasome subunit beta type-7 OS=Encepha... [more]
PSB6_ARATH6.519e-2233.91Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_TOBAC8.515e-2235.15Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_SCHPO1.112e-2133.13Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_BOVIN1.112e-2135.19Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB6_RAT2.477e-2135.19Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC31004C02EF AbioticL1 Citrus clementina cDNA clone C31004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bp
TAAGACTCGAACTCGCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCT
TGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGT
CAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTC
TGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTT
CCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCA
TTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAG
AATTGTGAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGC
AGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGC
TGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCA
CTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGTAAGC
TGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAA
TATATCCACATGGTTCAACTGACACTTTACCATTTGCGAACATGGGTTCT
GGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCT
GACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTA
TATTCATGACTTGGGAAGTGG
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