FC868740

Overview
NameFC868740
Unique NameFC868740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:30..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 57/162 (35.19%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TKDE +Q   +A+
Sbjct:   32 TGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 193          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y++ ++K++  Q VV+ +
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTL 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 56/162 (34.57%), Postives = 91/162 (56.17%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TK+E +Q   +A+
Sbjct:   33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 194          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y++ ++K++  Q VV+ +
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTL 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 57/166 (34.34%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 705
            GT+I+ + +  GVI+GAD+R T G  + ++   KI  +   IYCC +G+AADT+A++D V   L++H      E  V TA +L +   ++ +  + A +++ G D   G  ++ I   GS    PFA  GSGS       +SK+K  +TKDE I+ V +++   +F
Sbjct:   14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMF 179          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 52/165 (31.52%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGP-HLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            GT+I+ + F+DGVILGAD+R T G  + ++  +K+  +   I+CC +G+AADT+A+ D+V   L+L+    G  S   TA ++ K+  +  +  + A +++ G D      ++TI   GS   LP+A  GSGS       +  ++E ++K+E +  +  ++   I
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAI 182          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 53/162 (32.72%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H      + +V +A TL+K   + Y+  + A L++ G D            G     PFA  GSGS       +++Y+ G+TK+E  + VV+ +
Sbjct:   16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTL 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  + A  +  G D   GP ++T+   G   + PF   GSGS       ++KYK  ++K+E +Q   +A+
Sbjct:   15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNAL 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  + A  +  G D   GP ++T+   G   + PF   GSGS       ++KYK  ++K+E +Q   +A+
Sbjct:   15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNAL 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL--FNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            GTT VG++ +DGV+L AD RA+ G I+  +N  KIH +  ++   GAG   D   +  ++ ++ +L+   +G+   V    TLL   +    Y  Y+ A  ++GG D   P L+++   G      +A  GSG   A ++ +S+YK+ LT +EGI+L V AI + I
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYL-AWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAI 173          
The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PSB6_MOUSE2.477e-2135.19Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB9_SALSA7.208e-2132.72Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB6_HUMAN9.414e-2134.57Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB9_ONCMY1.229e-2032.72Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB6_DICDI1.775e-1934.34Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_YEAST3.955e-1931.52Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB9_ORYLA1.151e-1832.72Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PB6LB_SALSA3.702e-1733.13Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA6.314e-1733.13Proteasome subunit beta type-6-A like protein OS=S... [more]
PSMB_PYRHO2.399e-1633.73Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]

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Properties
Property NameValue
Genbank descriptionC31004C02EF AbioticL1 Citrus clementina cDNA clone C31004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bp
TAAGACTCGAACTCGCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCT
TGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGT
CAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTC
TGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTT
CCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCA
TTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAG
AATTGTGAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGC
AGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGC
TGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCA
CTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGTAAGC
TGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAA
TATATCCACATGGTTCAACTGACACTTTACCATTTGCGAACATGGGTTCT
GGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCT
GACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTA
TATTCATGACTTGGGAAGTGG
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