FC868740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21 Identity = 57/162 (35.19%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GV+LGAD+R T G + ++ +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TKDE +Q +A+ Sbjct: 32 TGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 193
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21 Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 KTGTTI+ + F GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y++ ++K++ Q VV+ + Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTL 177
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21 Identity = 56/162 (34.57%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GV+LGAD+R T G + ++ +K+ + I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TK+E +Q +A+ Sbjct: 33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 194
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20 Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 KTGTTI+ + F GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y++ ++K++ Q VV+ + Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTL 177
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19 Identity = 57/166 (34.34%), Postives = 93/166 (56.02%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 705 GT+I+ + + GVI+GAD+R T G + ++ KI + IYCC +G+AADT+A++D V L++H E V TA +L + ++ + + A +++ G D G ++ I GS PFA GSGS +SK+K +TKDE I+ V +++ +F Sbjct: 14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMF 179
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19 Identity = 52/165 (31.52%), Postives = 93/165 (56.36%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGP-HLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702 GT+I+ + F+DGVILGAD+R T G + ++ +K+ + I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI GS LP+A GSGS + ++E ++K+E + + ++ I Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAI 182
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18 Identity = 53/162 (32.72%), Postives = 88/162 (54.32%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 KTGTTI+ + F GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H + +V +A TL+K + Y+ + A L++ G D G PFA GSGS +++Y+ G+TK+E + VV+ + Sbjct: 16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTL 177
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17 Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GVI+G+D+RA+ G V K K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + + A + G D GP ++T+ G + PF GSGS ++KYK ++K+E +Q +A+ Sbjct: 15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNAL 177
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17 Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GVI+G+D+RA+ G V K K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + + A + G D GP ++T+ G + PF GSGS ++KYK ++K+E +Q +A+ Sbjct: 15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNAL 177
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL--FNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702 GTT VG++ +DGV+L AD RA+ G I+ +N KIH + ++ GAG D + ++ ++ +L+ +G+ V TLL + Y Y+ A ++GG D P L+++ G +A GSG A ++ +S+YK+ LT +EGI+L V AI + I Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYL-AWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAI 173 The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bpback to top |