FC868740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12 Identity = 50/169 (29.59%), Postives = 79/169 (46.75%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*A-----ALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICS 696 K GT +G+ +GV+L AD R+ P++ + EKIH +I AG AD + D Q Q++R G + T + H+ Y A AL++GGV+ P L+ P G+ ++G+ E +++ LT DEGI+L ++AI S Sbjct: 34 KRGTASIGVRTPEGVVLAADKRS-RSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIAS 201
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 58/192 (30.21%), Postives = 93/192 (48.44%), Query Frame = 1 Query: 139 SFDLCRRN--DMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 705 SFDL R D KK ++ K GTT + IF+ GV++ AD+RA+ G + ++ +KI + P + AG AAD + + + +LH R V A LL L++Y+G + ++ G D TGP L+ + G ++GSGS A + +S YK ++ +E +L +I F Sbjct: 32 SFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATF 222
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11 Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLL--KKHLFNYQGYV*---AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 K GTT +G+ ++G++L D R T +V K+ EKI + +I +G AD A+ + + Q++R RV + + K ++ G V AL++GGV+ G L P G+ +G+G AAM FE KY + + ++ I+L +DA+ Sbjct: 33 KRGTTSLGVKSKEGIVLVVDKRPTS-KLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAV 198
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 + GTT VG+ +DGV+L D R T ++ + EKI + +I +G AD + D + Q++R G +T L KK Q Y AL++ G+D L P G+ +GSG AM + ESKY E +T +EG++L + A+ Sbjct: 34 RRGTTAVGIKCKDGVVLAVDRRITS-KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGE---AITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYAL 199
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 + GTT VG+ +DGV+L D R T ++ + EKI + +I +G AD + D + Q++R G +T L KK Q Y AL++ G+D L P G+ +GSG AM + ESKY E +T +EG++L + A+ Sbjct: 34 RRGTTAVGIKCKDGVVLAVDRRITS-KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGE---AITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYAL 199
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 46/170 (27.06%), Postives = 79/170 (46.47%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 + GTT +G+ +DGV+L D R T +V ++ EKI + ++ +G AD + D + Q++R G E ++ L KK Q Y +L++ G+D L P G+ +GSG M + E +Y++ +T DEG++L + A+ Sbjct: 33 RRGTTAIGIACKDGVVLAVDRRITS-KLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEE---ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITAL 198
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 GTT + FQ GVI+ AD+RAT GP + + +K+ + P + AG AAD +++ Q +++ V A LL ++ Y+G + ++ G D GP L+ + G+ + ++GSGS+ A + + Y L +E L AI Sbjct: 59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAI 219
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11 Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHT----------GRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702 GTT VG+ DGVIL AD RA+ G V +K K+ Y+ I AG+ AD + + D++ + ++ Y++ G +R+ L+ K Y Y+ +++GG D P L + G + GSGS AM + E +Y +T DE L A+ S I Sbjct: 14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKN---IYHYNSITKYGPISIKGIATRLANVLSATK-----YFPYI-VQILIGGYD-DQPRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAI 177
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11 Identity = 51/170 (30.00%), Postives = 77/170 (45.29%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 + GTT VG+ +DGV+L D R T ++ + EKI + +I +G AD + D + Q++R G +T L KK Q Y AL++ G+D L P G+ +GSG AM + ESKY E +T EG++L + A+ Sbjct: 34 RRGTTAVGIKCKDGVVLAVDRRITS-KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGE---AITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYAL 199
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11 Identity = 50/167 (29.94%), Postives = 83/167 (49.70%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR---VVTALTLLKKHLFNYQGY--V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 K G T VG+ +GV+L + R T ++ ++ EKI + +I +G AD + + + Q+HR G + +V + LK+ Y G AAL++ GV+ P L+ P G+ +GSG AMA+FE KYK+ ++ +E I+L + A+ Sbjct: 34 KRGATAVGVKCNEGVVLAVEKRITSR-LIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFAL 198 The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bpback to top |