FC868740

Overview
NameFC868740
Unique NameFC868740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:30..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 50/169 (29.59%), Postives = 79/169 (46.75%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*A-----ALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICS 696
            K GT  +G+   +GV+L AD R+   P++   + EKIH    +I    AG  AD   + D    Q Q++R   G    + T    +  H+  Y     A     AL++GGV+   P L+   P G+       ++G+         E  +++ LT DEGI+L ++AI S
Sbjct:   34 KRGTASIGVRTPEGVVLAADKRS-RSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIAS 201          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 58/192 (30.21%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  139 SFDLCRRN--DMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 705
            SFDL R    D   KK  ++    K GTT +  IF+ GV++ AD+RA+ G  +  ++ +KI  + P +    AG AAD +     +  + +LH     R   V  A  LL   L++Y+G  +    ++ G D TGP L+ +   G        ++GSGS  A  + +S YK  ++ +E  +L   +I    F
Sbjct:   32 SFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATF 222          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLL--KKHLFNYQGYV*---AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            K GTT +G+  ++G++L  D R T   +V  K+ EKI  +  +I    +G  AD  A+ +    + Q++R       RV +    +   K ++   G V     AL++GGV+  G  L    P G+        +G+G  AAM  FE KY + +  ++ I+L +DA+
Sbjct:   33 KRGTTSLGVKSKEGIVLVVDKRPTS-KLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAV 198          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            + GTT VG+  +DGV+L  D R T   ++   + EKI  +  +I    +G  AD   + D    + Q++R   G     +T   L KK     Q Y           AL++ G+D     L    P G+        +GSG   AM + ESKY E +T +EG++L + A+
Sbjct:   34 RRGTTAVGIKCKDGVVLAVDRRITS-KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGE---AITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYAL 199          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            + GTT VG+  +DGV+L  D R T   ++   + EKI  +  +I    +G  AD   + D    + Q++R   G     +T   L KK     Q Y           AL++ G+D     L    P G+        +GSG   AM + ESKY E +T +EG++L + A+
Sbjct:   34 RRGTTAVGIKCKDGVVLAVDRRITS-KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGE---AITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYAL 199          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 46/170 (27.06%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            + GTT +G+  +DGV+L  D R T   +V  ++ EKI  +  ++    +G  AD   + D    + Q++R   G E   ++   L KK     Q Y           +L++ G+D     L    P G+        +GSG    M + E +Y++ +T DEG++L + A+
Sbjct:   33 RRGTTAIGIACKDGVVLAVDRRITS-KLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEE---ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITAL 198          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            GTT +   FQ GVI+ AD+RAT GP +  +  +K+  + P +    AG AAD      +++ Q +++         V  A  LL   ++ Y+G  +    ++ G D  GP L+ +   G+  +    ++GSGS+ A  + +  Y   L  +E   L   AI
Sbjct:   59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAI 219          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHT----------GRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            GTT VG+   DGVIL AD RA+ G  V +K   K+ Y+   I    AG+ AD + + D++ +   ++ Y++          G  +R+   L+  K     Y  Y+   +++GG D   P L  +   G      +   GSGS  AM + E +Y   +T DE   L   A+ S I
Sbjct:   14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKN---IYHYNSITKYGPISIKGIATRLANVLSATK-----YFPYI-VQILIGGYD-DQPRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAI 177          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 51/170 (30.00%), Postives = 77/170 (45.29%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            + GTT VG+  +DGV+L  D R T   ++   + EKI  +  +I    +G  AD   + D    + Q++R   G     +T   L KK     Q Y           AL++ G+D     L    P G+        +GSG   AM + ESKY E +T  EG++L + A+
Sbjct:   34 RRGTTAVGIKCKDGVVLAVDRRITS-KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGE---AITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYAL 199          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 50/167 (29.94%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR---VVTALTLLKKHLFNYQGY--V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            K G T VG+   +GV+L  + R T   ++  ++ EKI  +  +I    +G  AD   + +    + Q+HR   G  +    +V  +  LK+    Y G     AAL++ GV+   P L+   P G+        +GSG   AMA+FE KYK+ ++ +E I+L + A+
Sbjct:   34 KRGATAVGVKCNEGVVLAVEKRITSR-LIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFAL 198          
The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PSMA1_HALVO6.116e-1229.59Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSB5A_ARATH1.363e-1130.21Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSMA_METTH1.780e-1129.34Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METM75.178e-1130.00Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM55.178e-1130.00Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METJA5.178e-1127.06Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSB5_RAT5.178e-1128.57Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSMB_SULSO6.762e-1130.46Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSMA_METMP6.762e-1130.00Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_PYRHO8.832e-1129.94Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionC31004C02EF AbioticL1 Citrus clementina cDNA clone C31004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bp
TAAGACTCGAACTCGCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCT
TGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGT
CAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTC
TGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTT
CCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCA
TTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAG
AATTGTGAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGC
AGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGC
TGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCA
CTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGTAAGC
TGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAA
TATATCCACATGGTTCAACTGACACTTTACCATTTGCGAACATGGGTTCT
GGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCT
GACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTA
TATTCATGACTTGGGAAGTGG
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