FC868752

Overview
NameFC868752
Unique NameFC868752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9385 contig Ccv1_Contig9385:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: SMG1_DROME (Serine/threonine-protein kinase Smg1 OS=Drosophila melanogaster GN=Smg1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 66/151 (43.71%), Postives = 104/151 (68.87%), Query Frame = 3
Query:   93 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545
            P+   ++V +   Q T  + LAR LW ++  +  W +    + R ++VMSM+GY++GLGDRH  N++++  SG I+HID+  CFE      + PEKVPFRLT+ LV+AM ++GIEG FR  CE V++V+R  R++++ ++EAFV+DPL++W
Sbjct: 2045 PISVLLQVLDELSQETPNDLLARELWCQAGNAAEWRQSVRRFVRCMSVMSMIGYVIGLGDRHLDNVLINLGSGDIVHIDYNVCFEKGRTL-RIPEKVPFRLTQNLVQAMGITGIEGPFRLGCEYVLKVMRKERETLLTLLEAFVYDPLVDW 2194          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: SMG1_MOUSE (Serine/threonine-protein kinase SMG1 OS=Mus musculus GN=Smg1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 3
Query:   93 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545
            PL     V E  ++ T  N LA+ LW    T + W     +Y RS AVMSMVGY++GLGDRH  N+++   +G+++HID+  CFE   +  + PEKVPFR+T+ +  A+ V+G+EG FR +CE V+ ++R  R++++ ++EAFV+DPL++W
Sbjct: 2274 PLHVMKAVLEELMEATPPNLLAKELWSSCTTPDEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSL-RVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDW 2423          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: SMG1_HUMAN (Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 3
Query:   93 PLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545
            PL     V E  ++ T  N LA+ LW    T + W     +Y RS AVMSMVGY++GLGDRH  N+++   +G+++HID+  CFE   +  + PEKVPFR+T+ +  A+ V+G+EG FR +CE V+ ++R  R++++ ++EAFV+DPL++W
Sbjct: 2272 PLHVMKAVLEELMEATPPNLLAKELWSSCTTPDEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSL-RVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDW 2421          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: RAD3_SCHPO (Protein kinase rad3 OS=Schizosaccharomyces pombe GN=rad3 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSVFANTHVPPVVNA-----EETAPNRELPQPQRGARERELLQAVN 698
            W+  R NY R+LAVMS+VGY+LGLGDRH  N++   ++G+ +H+DF   F+  +  EK PEKVPFRLT  +V AM  +G EG FR   E  M++LRSN+D++M+++E+F+HDPL+ W     N     S + N     V++      +   P   +P    G  +  +  AVN
Sbjct: 2205 WVTSRQNYCRTLAVMSIVGYVLGLGDRHGENILFDEFTGEAIHVDFNCLFDKGLTFEK-PEKVPFRLTHNMVDAMGPTGYEGGFRKASEITMRLLRSNQDTLMSVLESFLHDPLVEW-----NRKKSSSKYPNNEANEVLDIIRKKFQGFMPGETIPLSIEGQIQELIKSAVN 2371          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: SMG1_DICDI (Probable serine/threonine-protein kinase smg1 OS=Dictyostelium discoideum GN=smg1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.020e-30
Identity = 63/165 (38.18%), Postives = 102/165 (61.82%), Query Frame = 3
Query:   63 LSFAPDYDHLPLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFN 557
            L+F       P    ++V    +Q T    L R LW  S +S     +  +Y+RSLA+MS++GY++GLGDRH  N++L   +G+I+HID+  CFE      K PE+VPFR+T++   A+ ++G++G FR T   +M +LR N+D ++ ++E F++DPL +W+  N
Sbjct: 1993 LNFMTPRSEWPKEILIQVLNELMQETPKWILQRELWFSSSSSSELFLKTQSYSRSLALMSVIGYMIGLGDRHLDNILLDLKTGEIVHIDYNICFEKGAEL-KIPERVPFRMTQIFEYALGLTGVQGTFRETSIQIMHLLRKNKDILLNLLETFIYDPLFDWKHSN 2156          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: SMG1_CAEEL (Serine/threonine-protein kinase smg-1 OS=Caenorhabditis elegans GN=smg-1 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.249e-29
Identity = 67/166 (40.36%), Postives = 96/166 (57.83%), Query Frame = 3
Query:   48 EHKYMLSFAPDYDHLPLIAKVEVFEYALQNTEGNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545
            +HK   S   D    P     EVFE     T  + ++R LW+++  +  W      Y+RSLAVMSMVG +LGLGDRH  NL++    G ++HID+  CF+   N  + PE VPFRLTR +  A+  S + G FR +C +V+  LRS    +  +++AFV DPL++W
Sbjct: 1892 DHKIDSSITSDRSKWPAEILEEVFESLTAKTPTDLISRELWMRANDATTWWSVTKRYSRSLAVMSMVGSVLGLGDRHLDNLLVDLKWGHVVHIDYNICFDKGKNL-RIPETVPFRLTRNMRHALGPSEMYGTFRESCVHVLSTLRSGHQVLTMLLDAFVFDPLVDW 2056          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 551
            W  +R  YTRS+A  SMVGY++GLGDRH  N+++ + + +++HID G  FE  +   K PE+VPFRLTR ++  M ++G+EG FR  CE  + V+R+N+++++ ++E F+HDPL  W L
Sbjct: 3656 WFVKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWAL 3773          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_HUMAN (Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 66/180 (36.67%), Postives = 106/180 (58.89%), Query Frame = 3
Query:  192 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEV-PQMSVFANTHVPPVVNAEETAPNR---ELPQPQRGARERELLQAVNQLGDASE 719
            IW E+R  YTRS+A  S+VGY+LGLGDRH  N++++  S +++HID G  FE        PE VPFRLTR +V  M ++G+EG FR  CE  M+V+R+++++++ ++E  ++DPL +W +     +  Q      T + P +NA++    R   ++ Q      ER L++   +L    E
Sbjct: 2844 IWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPT-PETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALYLQQRPEDETELHPTLNADDQECKRNLSDIDQSFNKVAERVLMRLQEKLKGVEE 3022          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_PIG (Serine-protein kinase ATM OS=Sus scrofa GN=ATM PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  192 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 551
            +W ERR  YT+S+A  S+VGY+LGLGDRH  N++++  S +++HID G  FE        PE VPFRLTR +V  M ++G+EG FR  CE  M+V+R+++++++ ++E  ++DPL +W +
Sbjct: 2845 VWFERRLAYTQSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPT-PETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTM 2963          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_MOUSE (Serine-protein kinase ATM OS=Mus musculus GN=Atm PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = 3
Query:  192 IWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 551
            +W E+R  YTRS+A  S+VGY+LGLGDRH  N++++  S +++HID G  FE        PE VPFRL+R +V  M ++G+EG FR  CE  M+V+RS++++++ ++E  ++DPL +W +
Sbjct: 2854 VWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPT-PETVPFRLSRDIVDGMGITGVEGVFRRCCEKTMEVMRSSQETLLTIVEVLLYDPLFDWTM 2972          
The following BLAST results are available for this feature:
BLAST of FC868752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SMG1_DROME2.177e-3343.71Serine/threonine-protein kinase Smg1 OS=Drosophila... [more]
SMG1_MOUSE8.274e-3343.05Serine/threonine-protein kinase SMG1 OS=Mus muscul... [more]
SMG1_HUMAN8.274e-3343.05Serine/threonine-protein kinase SMG1 OS=Homo sapie... [more]
RAD3_SCHPO5.930e-3140.46Protein kinase rad3 OS=Schizosaccharomyces pombe G... [more]
SMG1_DICDI5.020e-3038.18Probable serine/threonine-protein kinase smg1 OS=D... [more]
SMG1_CAEEL4.249e-2940.36Serine/threonine-protein kinase smg-1 OS=Caenorhab... [more]
ATM_ARATH1.615e-2845.38Serine/threonine-protein kinase ATM OS=Arabidopsis... [more]
ATM_HUMAN3.597e-2836.67Serine-protein kinase ATM OS=Homo sapiens GN=ATM P... [more]
ATM_PIG6.784e-2744.17Serine-protein kinase ATM OS=Sus scrofa GN=ATM PE=... [more]
ATM_MOUSE6.784e-2744.17Serine-protein kinase ATM OS=Mus musculus GN=Atm P... [more]

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Properties
Property NameValue
Genbank descriptionC31004D02EF AbioticL1 Citrus clementina cDNA clone C31004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868752 ID=FC868752; Name=FC868752; organism=Citrus clementina; type=EST; length=725bp
ATCTTATTCGGGAATATAGGGATGCCCGAAAGATCACCTTAAACCAAGAG
CATAAATATATGCTAAGTTTTGCACCAGATTATGACCATTTGCCTCTCAT
AGCCAAAGTGGAAGTTTTTGAATATGCTCTACAAAATACTGAAGGGAATG
ATCTGGCCAGGGTGCTTTGGTTAAAAAGCCGTACTTCTGAAATATGGCTA
GAGAGGAGGACGAACTATACCAGAAGTTTAGCAGTGATGAGCATGGTTGG
ATACCTTCTTGGTTTAGGGGATCGGCACCCAAGTAATCTTATGCTGCACC
GCTATAGTGGGAAAATTTTACACATAGATTTTGGGGACTGCTTTGAAGCT
TCAATGAACCGGGAGAAGTTCCCTGAAAAGGTTCCTTTTCGCTTGACTAG
AATGCTTGTTAAAGCTATGGAGGTTAGTGGTATTGAGGGCAACTTCCGTT
CAACATGCGAAAATGTGATGCAAGTTCTGCGCTCAAATAGGGATAGTGTT
ATGGCTATGATGGAGGCCTTTGTTCATGATCCTCTCATCAATTGGCGTCT
TTTCAATTTTAATGAAGTACCGCAAATGTCAGTGTTTGCAAATACTCATG
TCCCTCCTGTTGTGAATGCCGAAGAAACTGCTCCAAATAGAGAACTTCCT
CAACCACAACGGGGTGCTCGTGAAAGGGAGCTTCTTCAGGCTGTTAATCA
ACTTGGTGATGCTAGTGAGGTTTTG
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