FC868752

Overview
NameFC868752
Unique NameFC868752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9385 contig Ccv1_Contig9385:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_DROME (Serine/threonine-protein kinase ATR OS=Drosophila melanogaster GN=mei-41 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  168 WLKSR--TSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHD 530
            WL+ R  T   W E R  Y R++AVMSMVGY+LGLGDRH  N++    +G  +H+DF +C         +PE VPFRLT  ++ AM   G+EG+FR  CE  +++L+    ++M+++  FV+D
Sbjct: 2327 WLRQRFATPHSWYEARNTYIRTVAVMSMVGYILGLGDRHGENILFAEGNGDAVHVDF-NCLFNQGELLPYPEVVPFRLTHNMIVAMGPLGVEGSFRKCCEITLRLLKQESKTLMSILRPFVYD 2448          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_ASPOR (Serine/threonine-protein kinase tel1 OS=Aspergillus oryzae GN=tel1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  174 KSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSVFANTHVPPVV-NAEETAPNRELPQPQR 662
            K    + W  +R +YTRS A +S++G++LGLGDRH  N++L   +G+++HID G  FE        PE VPFRLTR LV  M V+  EG FR  CE  ++ LR    S+M +++   +DPL +W +                 PP++  A +  P+ E  +  R
Sbjct: 2720 KFNNPDDWFSKRLSYTRSTAAISILGHVLGLGDRHGHNILLDERTGEVVHIDLGVAFEQG-RVLPVPEVVPFRLTRDLVDGMGVTKTEGVFRRCCEFTLETLRRESYSIMTILDVLRYDPLYSWTVSPLRMKKMQDASEAGGGPPMLPGAADQRPSNEPSEADR 2882          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_GIBZE (Serine/threonine-protein kinase TEL1 OS=Gibberella zeae GN=TEL1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL 551
            W  +R  YTRS A +SM+G++LGLGDRH  N++L   +G+++HID G  FEA       PE VPFRLTR +V  M ++  EG FR  CE  +  LR  + S+M +++    DPL  W +
Sbjct: 2607 WFLKRLAYTRSTAAISMLGHVLGLGDRHGHNILLDHKTGEVVHIDLGVAFEAG-RILPVPEMVPFRLTRDIVDGMGITKTEGVFRRCCEFTLDALREEQYSIMTILDVLRFDPLYTWSI 2724          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_CRYNE (Serine/threonine-protein kinase TEL1 OS=Cryptococcus neoformans GN=TEL1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 54/124 (43.55%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  174 KSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545
            K R    W   R  Y RSLAV S+VG++L +GDRH SN+++   +G+++HIDFG  F A       PE VPFRLT  LV A+ V+G+ G FR   + V+Q L  + D ++ ++E F  DPL  W
Sbjct: 2775 KYRDPMAWFSMRLTYARSLAVTSIVGWVLEIGDRHCSNILMDECTGELVHIDFGIAFGAG-RILPIPELVPFRLTDDLVDALGVTGVNGTFRQCSQLVLQTLIDSSDVILTILEVFKQDPLHTW 2897          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATM_YEAST (Serine/threonine-protein kinase TEL1 OS=Saccharomyces cerevisiae GN=TEL1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 60/168 (35.71%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRL-------FNFNEVPQMSVFANTHVPPVVNAEETAPNRELPQPQRGARER 677
            W E +  YT+ +A  S+VGY+LGLGDRH +N++L   +G+ +HID G  F+        PE VPFRLTR +V    V+G++G FR +CE V  VLR +   VM ++     DPL +W +         F E  +++ F N  V   ++  +   N+E  +  +G  E+
Sbjct: 2587 WFEAKKTYTKGVAASSIVGYILGLGDRHLNNILLDCSTGEPIHIDLGIAFDQG-KLLPIPELVPFRLTRDIVDGFGVTGVDGLFRRSCERVYAVLRKDYVKVMCVLNILKWDPLYSWVMSPVKKYEHLFEEEHEITNFDN--VSKFISNNDRNENQESYRALKGVEEK 2751          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_YEAST (Serine/threonine-protein kinase MEC1 OS=Saccharomyces cerevisiae GN=MEC1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHD 530
            W   R  Y RS AVM+MVG++LGLGDRH  N++L   +GK+LH+DF DC      R   PE VPFRLT  L+ A+ + G EG F+ + E  + ++R N  ++M ++E  ++D
Sbjct: 2199 WFNARNTYARSYAVMAMVGHILGLGDRHCENILLDIQTGKVLHVDF-DCLFEKGKRLPVPEIVPFRLTPNLLDALGIIGTEGTFKKSSEVTLALMRKNEVALMNVIETIMYD 2309          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_CANGA (Serine/threonine-protein kinase MEC1 OS=Candida glabrata GN=MEC1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHD 530
            W   R  Y+RS AVM+MVGY+LGLGDRH  N++L   +GK+LH+DF   FE   N    PE VPFRLT+ L  A+ + G EG F+ + E  + ++R N  ++M ++E  ++D
Sbjct: 2210 WYRARNLYSRSYAVMAMVGYILGLGDRHCENILLDIKTGKVLHVDFDCLFEKGENL-PVPEIVPFRLTQNLQDALGILGTEGTFKKSSEVTLSLMRQNEVALMNIIETIMYD 2320          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_ENCCU (Probable serine/threonine-protein kinase MEC1 homolog OS=Encephalitozoon cuniculi GN=MEC1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 42/118 (35.59%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWR 548
            WL  R NYT++ A+M++VG+ +GLGDRH  N++    +G  +H+D  +C        + PE+VP+RLT+ +V A  V G+EG++ ++    + +   N++ +++ + +FV+DPL  WR
Sbjct: 1768 WLVARNNYTQTYAIMNIVGWFMGLGDRHAENILFDSNTGDTVHVDL-NCIFGKGKELQVPERVPYRLTQNIVDAFGVLGLEGSYNTSLCTTLDLFLKNKNILVSNLLSFVYDPLFEWR 1884          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_ASHGO (Serine/threonine-protein kinase MEC1 OS=Ashbya gossypii GN=MEC1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHD 530
            W   R  + RS AVM+MVG++LGLGDRH  N++L   +GK+LH+DF DC          PE VPFRLT+ +  A  V+G EG F+ + E  ++V+R+N  +++ ++E  ++D
Sbjct: 2155 WYNARNAFVRSYAVMAMVGHILGLGDRHLENILLDLQTGKVLHVDF-DCLFEKGKTLPVPEIVPFRLTQNIQDAFGVTGTEGTFKKSSEVTVRVMRNNELALVNIIETIMYD 2265          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_KLULA (Serine/threonine-protein kinase MEC1 OS=Kluyveromyces lactis GN=MEC1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 46/121 (38.02%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLFN 557
            W   R  + RS +VM+MVG++LGLGDRH  N++L   +G++LH+DF DC      +   PE VPFRLT+ +  A  + G EG F+ + E  ++V+R+N   ++ ++E  ++D  I+  + N
Sbjct: 2118 WYNARNGFVRSYSVMAMVGHILGLGDRHCENILLDVLTGRVLHVDF-DCLFEKGKKLPVPEIVPFRLTQNITDAFGIIGTEGTFKKSSEVTLRVMRNNEIGLVNIIETIMYDRKIDESIQN 2237          
The following BLAST results are available for this feature:
BLAST of FC868752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ATR_DROME1.324e-2242.28Serine/threonine-protein kinase ATR OS=Drosophila ... [more]
ATM_ASPOR1.324e-2235.98Serine/threonine-protein kinase tel1 OS=Aspergillu... [more]
ATM_GIBZE2.950e-2243.70Serine/threonine-protein kinase TEL1 OS=Gibberella... [more]
ATM_CRYNE3.852e-2243.55Serine/threonine-protein kinase TEL1 OS=Cryptococc... [more]
ATM_YEAST6.571e-2235.71Serine/threonine-protein kinase TEL1 OS=Saccharomy... [more]
ATR_YEAST7.265e-2143.75Serine/threonine-protein kinase MEC1 OS=Saccharomy... [more]
ATR_CANGA9.489e-2144.64Serine/threonine-protein kinase MEC1 OS=Candida gl... [more]
ATR_ENCCU1.049e-1935.59Probable serine/threonine-protein kinase MEC1 homo... [more]
ATR_ASHGO1.789e-1941.96Serine/threonine-protein kinase MEC1 OS=Ashbya gos... [more]
ATR_KLULA2.337e-1938.02Serine/threonine-protein kinase MEC1 OS=Kluyveromy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004D02EF AbioticL1 Citrus clementina cDNA clone C31004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868752 ID=FC868752; Name=FC868752; organism=Citrus clementina; type=EST; length=725bp
ATCTTATTCGGGAATATAGGGATGCCCGAAAGATCACCTTAAACCAAGAG
CATAAATATATGCTAAGTTTTGCACCAGATTATGACCATTTGCCTCTCAT
AGCCAAAGTGGAAGTTTTTGAATATGCTCTACAAAATACTGAAGGGAATG
ATCTGGCCAGGGTGCTTTGGTTAAAAAGCCGTACTTCTGAAATATGGCTA
GAGAGGAGGACGAACTATACCAGAAGTTTAGCAGTGATGAGCATGGTTGG
ATACCTTCTTGGTTTAGGGGATCGGCACCCAAGTAATCTTATGCTGCACC
GCTATAGTGGGAAAATTTTACACATAGATTTTGGGGACTGCTTTGAAGCT
TCAATGAACCGGGAGAAGTTCCCTGAAAAGGTTCCTTTTCGCTTGACTAG
AATGCTTGTTAAAGCTATGGAGGTTAGTGGTATTGAGGGCAACTTCCGTT
CAACATGCGAAAATGTGATGCAAGTTCTGCGCTCAAATAGGGATAGTGTT
ATGGCTATGATGGAGGCCTTTGTTCATGATCCTCTCATCAATTGGCGTCT
TTTCAATTTTAATGAAGTACCGCAAATGTCAGTGTTTGCAAATACTCATG
TCCCTCCTGTTGTGAATGCCGAAGAAACTGCTCCAAATAGAGAACTTCCT
CAACCACAACGGGGTGCTCGTGAAAGGGAGCTTCTTCAGGCTGTTAATCA
ACTTGGTGATGCTAGTGAGGTTTTG
back to top