FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_STAHJ (Copper-exporting P-type ATPase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.375e-40
Identity = 93/219 (42.47%), Postives = 133/219 (60.73%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            LTLVASAE +SEHPLA A+V YA+         +N               L++V+++  LPG GIQ  I    + VGN+KL+ +  I I   ++  + ++E    T +L+AYD  L G++ +AD VK  A   ++ L  M +R VM+TGDN RTA A+A+E+GI  V+A V+P  KA  +   Q+    VAMVGDGIND+PAL  AD+G+A+G GT++A
Sbjct:  518 LTLVASAENNSEHPLATAIVNYAKQH------KVN---------------LVNVTNYQTLPGHGIQAIIDDSMLFVGNQKLMLDHQINIQS-IKQKMKQMEAEGHTVMLIAYDGKLRGMIAVADTVKASAKEAIQQLSSMNIRTVMLTGDNERTAKAIAKEVGIDQVIAGVLPEDKAHHITQLQEQKHNVAMVGDGINDAPALVKADIGIAMGTGTEVA 714          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7B_SHEEP (Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 100/254 (39.37%), Postives = 133/254 (52.36%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQ-----------------------------------VLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L +V +AEASSEHPL  AV  Y                    KE  G+  L    DF A+PG GI C +S  +                                   VL+GNR+ +  +G+T+   V   + + E   +T ILVA D  L G++ +AD VK+EAA+ V  L  MGV  V++TGDN +TA A+A ++GI  V A+V+P+ K   V+  Q  G  VAMVGDG+NDSPALA ADVG+AIG GTD+A
Sbjct: 1097 LAVVGTAEASSEHPLGVAVTRYC-------------------KEELGTETLGCCMDFQAVPGCGISCKVSSVESILAQGERLQGPPTAHQNRVGSEPSETDAATQTFSVLIGNREWMRRNGLTVTSDVRDAMTDHETKGQTAILVAIDGVLCGMIAVADSVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKRVAMVGDGVNDSPALAQADVGIAIGTGTDVA 1331          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7B_HUMAN (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 102/254 (40.16%), Postives = 135/254 (53.15%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQ-----------------------------------VLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L +V +AEASSEHPL  AV +Y                    KE  G+  L   +DF A+PG GI C +S  +                                   VL+GNR+ L  +G+TI   V   + + E   +T ILVA D  L G++ IAD VK+EAA+ V  L  MGV  V++TGDN +TA A+A ++GI  V A+V+P+ K   V+  Q  G  VAMVGDG+NDSPALA AD+G+AIG GTD+A
Sbjct: 1057 LAVVGTAEASSEHPLGVAVTKYC-------------------KEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVA 1291          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7B_MOUSE (Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.224e-40
Identity = 99/249 (39.76%), Postives = 134/249 (53.82%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQ------------------------------VLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L +V +AEASSEHPL  AV +Y                    KE  G+  L   +DF A+PG GI C +S  +                              VL+GNR+ +  +G+TI   +   + + E   +T ILVA D  L G++ IAD VK EAA+ +  L  MGV   ++TGDN +TA A+A ++GI  V A+V+P+ K   V+  Q +G  VAMVGDG+NDSPALA ADVG+AIG GTD+A
Sbjct: 1059 LAVVGTAEASSEHPLGVAVTKYC-------------------KEELGTETLGYSTDFQAVPGCGISCKVSNVEGILARSDLTAHPVGVGNPPTGEGAGPQTFSVLIGNREWMRRNGLTISSDISDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKPEAALAIYTLKSMGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVA 1288          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7B_RAT (Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 99/249 (39.76%), Postives = 132/249 (53.01%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQ------------------------------VLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L +V +AEASSEHPL  AV +Y                    KE  G+  L   +DF A+PG GI C +S  +                              VL+GNR+ +  +G+TI   +   + + E   +T ILVA D  L G++ IAD VK EAA+    L  MGV   ++TGDN +TA A+A ++GI  V A+V+P+ K   V+  Q  G  VAMVGDG+NDSPALA ADVG+AIG GTD+A
Sbjct: 1050 LAVVGTAEASSEHPLGVAVTKYC-------------------KEELGTETLGYSTDFQAVPGCGISCKVSNVESILAHRGPTAHPIGVGNPPIGEGTGPQTFSVLIGNREWMRRNGLTISSDISDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKPEAALASITLKSMGVDVALITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVA 1279          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCU_SINMW (Copper-transporting P-type ATPase OS=Sinorhizobium medicae (strain WSM419) GN=actP PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 94/238 (39.50%), Postives = 135/238 (56.72%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            GR  +T        +  E L LVAS E  SEHP+A+A+V  A+                    S G   +  VS F A PG G+   +SG++VLVG  + L ++GI I    +     L    ++ +  A D  L  ++ ++DPVK      ++ L  +G++  MVTGDN RTA A+A+++GI +V+A+V+P GK DAVR  ++ G  VA +GDGIND+PALA ADVG+A+G GTDIA
Sbjct:  523 GRPELTDLVAAEGFEPDEVLCLVASLETLSEHPIAEAIVSAAK--------------------SRGIATVA-VSAFEATPGFGVSGTVSGRRVLVGADRALVKNGIDITGFADE-AERLGSGGKSPLYAAIDGRLAAIVAVSDPVKESTPQAIKSLHALGLKVAMVTGDNRRTAEAIAKKLGIDEVVAEVLPEGKVDAVRKLRQGGRSVAFIGDGINDAPALAEADVGIAVGTGTDIA 738          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_SALTI (Copper-exporting P-type ATPase A OS=Salmonella typhi GN=copA PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.287e-38
Identity = 91/238 (38.24%), Postives = 130/238 (54.62%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+  V   K F  +D  + L L A+ E  S HPLA A++E A                       G   L  V+ F  L G G+     G Q+L+GN+ LLNE  +   D       +  + + T +L+A D     ++ + DP++ ++   +E L   G R VM+TGDN  TA+A+A+E GI +V+A V+P GKADA++  Q  G  VAMVGDGIND+PALA ADVG+A+G G+D+A
Sbjct:  530 GKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLAHAILEKA-----------------------GDDKLPQVNGFRTLRGLGVSGEAEGHQLLLGNQALLNEQHVATDDMTAEITAQASQGS-TPVLLAIDGKAAALLAVRDPLRSDSIAALERLHNAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKADAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVA 743          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7A_HUMAN (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.867e-38
Identity = 100/281 (35.59%), Postives = 150/281 (53.38%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDR---GEFLTLVASAEASSEHPLAKAVVEYAR------------------------------------HFHFFDD----PSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G   V   KV T+ +R    + L +V +AE++SEHPL  A+ +Y +                                    +++  D+     SL     S+ + ST S  ++D    +AL  +  +       VL+GNR+ +  +G+ I + V  F+ E E   RT +LVA DD L G++ IAD VK EA + +  L  MG+  V++TGDN +TA ++A ++GI  V A+V+P+ K   V+  Q++G  VAMVGDGINDSPALA A+VG+AIG GTD+A
Sbjct: 1052 GTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYK-------VLIGNREWMIRNGLVINNDVNDFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMANVGIAIGTGTDVA 1325          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_SALTY (Copper-exporting P-type ATPase A OS=Salmonella typhimurium GN=copA PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.890e-38
Identity = 90/238 (37.82%), Postives = 130/238 (54.62%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+  V   K F  ++  + L L A+ E  S HPLA A++E A                       G   L  V+ F  L G G+     G Q+L+GN+ LLNE  +   D       +  + + T +L+A D     ++ + DP++ ++   +E L   G R VM+TGDN  TA+A+A+E GI +V+A V+P GKADA++  Q  G  VAMVGDGIND+PALA ADVG+A+G G+D+A
Sbjct:  530 GKPQVVAIKTFNGVEEAQALRLAAALEQGSSHPLAHAILEKA-----------------------GDDKLPQVNGFRTLRGLGVSGEAEGHQLLLGNQALLNEQHVATDDMTAEITAQASQGS-TPVLLAIDGKAAALLAVRDPLRSDSIAALERLHNAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKADAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVA 743          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCU2_RHIME (Copper-transporting ATPase 2 OS=Rhizobium meliloti GN=actP2 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.890e-38
Identity = 94/241 (39.00%), Postives = 136/241 (56.43%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELE---ESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            GR  +T        +  E L LVAS E  SEHP+A+A+V  A+                 SK    +     V+ F A PG G+   +SG+QVLVG  + L  +GI     V  F  E E    S ++ +  A +  L  ++ ++DPVK      +  L ++G++  M+TGDN RTA A+AR++GI +V+A+V+P GK +A+R  ++ G  VA +GDGIND+PALA ADVG+A+G GTDIA
Sbjct:  523 GRPELTDLVAAEGFEADEVLFLVASLETLSEHPIAEAIVSAAK-----------------SKGIATAA----VNGFEATPGFGVSGSVSGRQVLVGADRALATNGID----VSGFSTEAELLGASGKSPLYAAIEGRLAAIVAVSDPVKETTPQAIRSLHELGLKVAMITGDNRRTAEAIARKLGIDEVVAEVLPEGKVEAIRKLRQGGRSVAFIGDGINDAPALAEADVGIAVGTGTDIA 738          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
COPA_STAHJ1.375e-4042.47Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
ATP7B_SHEEP4.000e-4039.37Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7... [more]
ATP7B_HUMAN4.000e-4040.16Copper-transporting ATPase 2 OS=Homo sapiens GN=AT... [more]
ATP7B_MOUSE5.224e-4039.76Copper-transporting ATPase 2 OS=Mus musculus GN=At... [more]
ATP7B_RAT5.776e-3939.76Copper-transporting ATPase 2 OS=Rattus norvegicus ... [more]
ATCU_SINMW7.544e-3939.50Copper-transporting P-type ATPase OS=Sinorhizobium... [more]
COPA_SALTI1.287e-3838.24Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
ATP7A_HUMAN2.867e-3835.59Copper-transporting ATPase 1 OS=Homo sapiens GN=AT... [more]
COPA_SALTY4.890e-3837.82Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
ATCU2_RHIME4.890e-3839.00Copper-transporting ATPase 2 OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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