FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPF_MYCBO (Probable cation-transporting ATPase F OS=Mycobacterium bovis GN=ctpF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 1
Query:  391 YDDNLI-------GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD-------------------------------VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            +D+N+I       G+  ++DP +  AA  V      G+   M+TGD+  TA A+A E+G+ D                               V A V P  K   V++ Q  G +VAM GDG+ND+PAL  A++G+A+G  GT++A
Sbjct:  522 FDENVIPGSLALTGLQAMSDPPRAAAASAVAACHSAGIAVKMITGDHAGTATAIATEVGLLDNTEPAAGSVLTGAELAALSADQYPEAVDTASVFARVSPEQKLRLVQALQARGHVVAMTGDGVNDAPALRQANIGVAMGRGGTEVA 668          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCL_MYCGE (Probable cation-transporting P-type ATPase OS=Mycoplasma genitalium GN=pacL PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  406 IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI--------------------QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            +G + + DP ++E+   +    K  + P+M+TGD+ +TA  +A+E+GI                      V A V P  K   V ++++ G  V++ GDG+ND+PAL  +DVG  +G  G DIA
Sbjct:  491 LGFVSLQDPPRKESKEAILACKKANITPIMITGDHLKTATVIAKELGILTLDNQAVLGSELDEKKILDYRVFARVTPQQKLAIVSAWKEAGFTVSVTGDGVNDAPALIKSDVGCCMGITGVDIA 614          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: AT2C2_HUMAN (Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens GN=ATP2C2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 54/178 (30.34%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  298 LLNESGITIPDHVESFVVELEESARTGIL------VAYDDNL-----IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAV---------------------------RSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            + N  GI +P   +     L+E  R G L      +A    L     +G++GI DP +      V+ L + GV   M+TGD   TA A+ R IG+ +     M   + D+V                           ++ Q+ G+IVAM GDG+ND+ AL +AD+G+A+G  GTD++
Sbjct:  522 MYNNGGIPLPLTPQQRSFCLQEEKRMGSLGLRVLALASGPELGRLTFLGLVGIIDPPRVGVKEAVQVLSESGVSVKMITGDALETALAIGRNIGLCNGKLQAMSGEEVDSVEKGELADRVGKVSVFFRTSPKHKLKIIKALQESGAIVAMTGDGVNDAVALKSADIGIAMGQTGTDVS 699          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ACA1_ARATH (Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 64/216 (29.63%), Postives = 92/216 (42.59%), Query Frame = 1
Query:  235 LPGRGIQCFISGKQVLVGNR--KLLNESGITIP------DHVESFVVELEESARTGILVAYDD----------------NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI---------------------------QDVMADVMPAGKADAVR----SFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            LP R  +    G   +V +   K +N+ G  +P       H+++ + E    A   + +AY +                  IG++GI DPV+      V      G+   MVTGDN  TA A+ARE GI                             VMA   P  K   VR     FQ+   +VA+ GDG ND+PAL  AD+G+A+G +GT++A
Sbjct:  571 LPERHFRAHCKGASEIVLDSCDKYINKDGEVVPLDEKSTSHLKNIIEEFASEALRTLCLAYFEIGDEFSLEAPIPSGGYTCIGIVGIKDPVRPGVKESVAICKSAGITVRMVTGDNLTTAKAIARECGILTDDGIAIEGPEFREKSDEELLKLIPKLQVMARSSPMDKHTLVRLLRTMFQE---VVAVTGDGTNDAPALHEADIGLAMGISGTEVA 783          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ACA2_ORYSJ (Calcium-transporting ATPase 2, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os03g0616400 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 61/219 (27.85%), Postives = 88/219 (40.18%), Query Frame = 1
Query:  217 VSDFSALPGRGIQCFISGKQ--VLVGNRKLLNESGITIP------DHVESFVVELEESARTGILVAYDD----------------NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI---------------------------QDVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            +S    LPG G +    G    VL    K ++E G  +P        +   +      A   + +AY +                  IG++GI DPV+      V      G+   M+TGDN  TA A+ARE GI                             V+A   P  K   V+  +     +VA+ GDG ND+PAL  AD+G+A+G AGT++A
Sbjct:  569 MSTILELPGGGYRAHCKGASEIVLAACDKFIDERGCIVPLDDKTSSKLNDIIKAFSSEALRTLCLAYREMEEGFSTQEQIPLQGYTCIGIVGIKDPVRPGVRQSVATCRSAGISVRMITGDNIDTAKAIARECGILTKDGIAIEGAEFREKSAEELHDLIPKMQVLARSSPLDKHTLVKHLRTAFNEVVAVTGDGTNDAPALREADIGLAMGIAGTEVA 787          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATC_TRYBB (Probable calcium-transporting ATPase OS=Trypanosoma brucei brucei GN=TBA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 41/141 (29.08%), Postives = 64/141 (45.39%), Query Frame = 1
Query:  385 VAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVM-------------------------------PAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            V  D   +G  G+ DP + E    +      G+R V++TGD   TA A+  ++G+    AD                                 P+ K   V+  + +  I AM GDG+ND+PAL  AD+G+A+G+GT++A
Sbjct:  586 VESDLTFVGACGMLDPPREEVRDAIVKCRTAGIRVVVITGDRKETAEAICCKLGLLSSTADTTGLSYTGQELDAMTPAQKREAVLTAVLFSRTDPSHKMQLVQLLKDERLICAMTGDGVNDAPALKKADIGIAMGSGTEVA 726          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ACA6_ORYSJ (Probable calcium-transporting ATPase 6, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os05g0495600 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 60/212 (28.30%), Postives = 89/212 (41.98%), Query Frame = 1
Query:  235 LPGRGIQCFISGKQVLVGNR--KLLNESGITIP------DHVESFVVELEESARTGILVAYDD---------------NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQ---------------------------DVMADVMPAGKADAVRSFQK-DGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            LP  GI+ F  G   ++  +   + N  G  +P       +V + +      A   + +A+ D                LI V GI DPV+      V   +  G+R  MVTGDN  TA A+A+E GI                             V+A  +P  K   V S +     +VA+ GDG ND+PAL  +D+G+A+G  GT++A
Sbjct:  554 LPNGGIRTFCKGASEIILEQCNTIHNTDGNIVPLSEMQKHNVLNIINSFASEALRTLCIAFKDMDEFPNDQPISDDGYTLIAVFGIKDPVRPGVKDAVRTCMAAGIRVRMVTGDNINTAKAIAKECGILTEDGIAIEGQQLNNKSSDELKELLPKIQVIARSLPMDKYKLVTSLKSMYQEVVAVTGDGTNDAPALHESDIGLAMGITGTEVA 765          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: AHM1_ARATH (Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = 1
Query:   52 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYD-------------DNLIGVMGIADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKD-GSIVAMVGDGINDSPALAAADVGMAI 693
            E L + A+ E  + HP+ +AVV++          S+  D  S           + V  F   PGRG+   ++G +  V     L ++ +   + + S     +ES +    V                D  + ++ + D  +   + V+  L     +R +M+TGD+  +A  VA  +GI +V  ++ P  K + V++  ++ G  + MVG+GIND+PALAAA VG+ +
Sbjct:  493 EALAVAAAMEKGTTHPIGRAVVDH----------SVGKDLPS-----------IFVESFEYFPGRGLTATVNGVKT-VAEESRLRKASLGSIEFITSLFKSEDESKQIKDAVNASSYGKDFVHAALSVDQKVTLIHLEDQPRPGVSGVIAELKSWARLRVMMLTGDHDSSAWRVANAVGITEVYCNLKPEDKLNHVKNIAREAGGGLIMVGEGINDAPALAAATVGIVL 699          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
CTPF_MYCBO7.861e-1231.97Probable cation-transporting ATPase F OS=Mycobacte... [more]
ATCL_MYCGE1.027e-1132.26Probable cation-transporting P-type ATPase OS=Myco... [more]
AT2C2_HUMAN1.341e-1130.34Calcium-transporting ATPase type 2C member 2 OS=Ho... [more]
ACA1_ARATH1.751e-1129.63Calcium-transporting ATPase 1, chloroplastic OS=Ar... [more]
ACA2_ORYSJ2.287e-1127.85Calcium-transporting ATPase 2, plasma membrane-typ... [more]
ATC_TRYBB3.901e-1129.08Probable calcium-transporting ATPase OS=Trypanosom... [more]
ACA6_ORYSJ5.095e-1128.30Probable calcium-transporting ATPase 6, plasma mem... [more]
AHM1_ARATH6.655e-1125.76Probable cadmium/zinc-transporting ATPase HMA1, ch... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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