FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAAR (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain MRSA252) GN=copB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 80/239 (33.47%), Postives = 131/239 (54.81%), Query Frame = 1
Query:    1 GRATVTTAKVFT-KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G  +V   + FT +++  E L+L AS E++S HPLA  +V++A+             G++ S  +          + + +PG G++  +  K++ + N   L++S     D+ +     L +   +   + +D  +IG++   D +K  +  +V  LL   + PVM+TGDN   A  VA E+GI DV A +MP  K   ++ +Q +GS + MVGDGIND+P+L  AD+GMAIGAGTD+A
Sbjct:  382 GNFSVNHYESFTDELNNEEILSLFASLESNSNHPLATGIVDFAK-------------GKNISYATP--------QEVNNIPGVGLEGTVDNKKLKIVNVSYLDKSNF---DYNKEQFTNLAQQGNSISYLIHDRQVIGIIAQGDKIKESSKQMVSDLLSRNITPVMLTGDNKEVAQTVAEELGISDVHAQLMPEDKESIIQDYQSNGSKIMMVGDGINDAPSLIRADIGMAIGAGTDVA 596          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAHJ (Probable copper-transporting P-type ATPase B OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copB PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.433e-31
Identity = 77/220 (35.00%), Postives = 120/220 (54.55%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHF-FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L+L AS E+ S HPLA ++V++ +  +  F +P                       D + +PG G++  I  K   + N   L++ G    ++     ++L +   +   +  D  +IG++   D +K  +  +V  LL   + PVM+TGDN   AHAVA+E+GI DV A +MP  K   ++ +Q DG+ V MVGDGIND+P+L  AD+G+AIGAGTD+A
Sbjct:  395 LSLFASLESQSNHPLAISIVDFTKSKNVSFTNPQ----------------------DVNNIPGVGLEGLIDNKTYKITNVSYLDQHGF---EYDNDLFIKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRHITPVMLTGDNDEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVA 589          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAEQ (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copB PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.433e-31
Identity = 77/220 (35.00%), Postives = 121/220 (55.00%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHF-FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L+L AS E+ S HPLA ++V++A+  +  F +P                       D + +PG G++  I  K   + N   L++ G    ++     ++L +   +   +  D  +IG++   D +K  +  +V  LL   + PVM+TGDN   AHAVA+E+GI DV A +MP  K   ++ +Q +G+ V MVGDGIND+P+L  AD+G+AIGAGTD+A
Sbjct:  395 LSLFASLESQSNHPLAISIVDFAKSKNVSFTNPQ----------------------DVNNIPGVGLEGLIHNKTYKITNVSYLDQHGF---EYDNDLFIKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSNGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVA 589          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPC_MYCLE (Probable cation-transporting P-type ATPase C OS=Mycobacterium leprae GN=ctpC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.789e-31
Identity = 88/241 (36.51%), Postives = 124/241 (51.45%), Query Frame = 1
Query:    1 GRATVTTAKVFTK-MDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            GR  VT      K     + L   AS+E  S HPLA+AV+      H    P                       +   L G G++ +  G+ +L+G+  LL    + +      +V +L     T +L A D  L+G++ + D V+ EAA V+  L   GVR  VM+TGD+   A AVA E+GI +  A+VMP  K   VR  Q +G +V MVGDG+ND+PALAAAD+G+A+G AGTD+A
Sbjct:  424 GRPVVTNIVAMHKDWSPEQVLAYAASSEIHSRHPLAEAVIRSTEERHISIPPH---------------------EECEVLVGLGMRTWADGRTLLLGSPSLLCAEKVKVSKTASEWVDKLRHQTETPLLFAVDGTLVGLISLRDEVRPEAAEVLTKLRASGVRRIVMLTGDHPDIAKAVATELGIDEWRAEVMPEDKLKVVRDLQNEGYVVGMVGDGVNDAPALAAADIGIAMGLAGTDVA 643          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAAT (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=copB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.789e-31
Identity = 80/223 (35.87%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHF-FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L+L AS E+ S HPLA ++V++A+  +  F +P                       D + +PG G++  I  K   + N   L++  +   D +        + A+ G  ++Y   D  +IG++   D +K  +  +V  LL   + PVM+TGDN   AHAVA+E+GI DV A +MP  K   ++ +Q DG+ V MVGDGIND+P+L  AD+G+AIGAGTD+A
Sbjct:  395 LSLFASLESQSNHPLAISIVDFAKSKNVSFTNPQ----------------------DVNNIPGVGLEGLIDNKTYKITNVSYLDKHKLNYDDDL------FTKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVA 589          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAA3 (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300) GN=copB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.789e-31
Identity = 80/223 (35.87%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHF-FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L+L AS E+ S HPLA ++V++A+  +  F +P                       D + +PG G++  I  K   + N   L++  +   D +        + A+ G  ++Y   D  +IG++   D +K  +  +V  LL   + PVM+TGDN   AHAVA+E+GI DV A +MP  K   ++ +Q DG+ V MVGDGIND+P+L  AD+G+AIGAGTD+A
Sbjct:  395 LSLFASLESQSNHPLAISIVDFAKSKNVSFTNPQ----------------------DVNNIPGVGLEGLIDNKTYKITNVSYLDKHKLNYDDDL------FTKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVA 589          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CADA_STAAR (Probable cadmium-transporting ATPase OS=Staphylococcus aureus (strain MRSA252) GN=cadA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.290e-30
Identity = 78/242 (32.23%), Postives = 137/242 (56.61%), Query Frame = 1
Query:    1 GRATVTTAKVFT-KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGIT-IPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAI-GAGTDIA 714
            G   VT  KV   +++  E  +++ + E  S+HPLA A+++ A             D  ++S         + V DF+++ GRGIQ  I G    +G+ +L  E  ++      E+ V  L+   +T +++  D  ++GV+ +AD V+  +  V++ L ++G++  +M+TGDN  TA A+   +G+ D+ +++MP  K D ++  + +   VAM+GDG+ND+PALAA+ VG+A+ GAGTD A
Sbjct:  422 GVPVVTDFKVLNDQVEEKELFSIITALEYRSQHPLASAIMKKAEQ-----------DNITYSD--------VRVEDFTSITGRGIQGNIDGTTYYIGSPRLFKELNVSDFSLEFENKVKVLQNQGKTAMIIGTDQTILGVIAVADEVRETSKNVIQKLHQLGIKQTIMLTGDNQGTAEAIGAHVGVSDIQSELMPQDKLDYIKKMKAEHGNVAMIGDGVNDAPALAASTVGIAMGGAGTDTA 644          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAES (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.200e-30
Identity = 79/223 (35.43%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   58 LTLVASAEASSEHPLAKAVVEYARHFHF-FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L+L AS E+ S HPLA ++V++A+  +  F +P                       D + +PG G++  I  K   + N   L++  +   D +        + A+ G  ++Y   D  +IG++   D +K  +  +V  LL   + PVM+TGDN   AHAVA+E+GI DV A +MP  K   ++ +Q +G+ V MVGDGIND+P+L  AD+G+AIGAGTD+A
Sbjct:  395 LSLFASLESQSNHPLAISIVDFAKSKNVSFTNPQ----------------------DVNNIPGVGLEGLIDNKTYKITNVSYLDKHKLNYDDDL------FTKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSNGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVA 589          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPB_MYCTU (Cation-transporting P-type ATPase B OS=Mycobacterium tuberculosis GN=ctpB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.901e-30
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    7 ATVTTAKVFT-KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFV---VELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            +TVT A   T + DR E L L A+ E++SEH +A A+V  +        P   P                 V+ F A+ G G+   + G  V VG    +     T P H  + V   ++ E    T + V+ D  +   + IAD +K  AA  V  L   G+R +++TGDN   A AVA ++GI   +AD++P GK D ++  +++G  VAMVGDGIND PAL  AD+G+AIG GTD+A
Sbjct:  459 STVTMAGSGTSERDREEVLGLAAAVESASEHAMAAAIVAAS--------PDPGP-----------------VNGFVAVAGCGVSGEVGGHHVEVGKPSWITR---TTPCHDAALVSARLDGESRGETVVFVSVDGVVRAALTIADTLKDSAAAAVAALRSRGLRTILLTGDNRAAADAVAAQVGIDSAVADMLPEGKVDVIQRLREEGHTVAMVGDGINDGPALVGADLGLAIGRGTDVA 670          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPB_MYCBO (Cation-transporting P-type ATPase B OS=Mycobacterium bovis GN=ctpB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.901e-30
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    7 ATVTTAKVFT-KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFV---VELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            +TVT A   T + DR E L L A+ E++SEH +A A+V  +        P   P                 V+ F A+ G G+   + G  V VG    +     T P H  + V   ++ E    T + V+ D  +   + IAD +K  AA  V  L   G+R +++TGDN   A AVA ++GI   +AD++P GK D ++  +++G  VAMVGDGIND PAL  AD+G+AIG GTD+A
Sbjct:  459 STVTMAGSGTSERDREEVLGLAAAVESASEHAMAAAIVAAS--------PDPGP-----------------VNGFVAVAGCGVSGEVGGHHVEVGKPSWITR---TTPCHDAALVSARLDGESRGETVVFVSVDGVVRAALTIADTLKDSAAAAVAALRSRGLRTILLTGDNRAAADAVAAQVGIDSAVADMLPEGKVDVIQRLREEGHTVAMVGDGINDGPALVGADLGLAIGRGTDVA 670          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
COPB_STAAR3.394e-3133.47Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAHJ4.433e-3135.00Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAEQ4.433e-3135.00Probable copper-transporting P-type ATPase B OS=St... [more]
CTPC_MYCLE5.789e-3136.51Probable cation-transporting P-type ATPase C OS=My... [more]
COPB_STAAT5.789e-3135.87Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAA35.789e-3135.87Probable copper-transporting P-type ATPase B OS=St... [more]
CADA_STAAR1.290e-3032.23Probable cadmium-transporting ATPase OS=Staphyloco... [more]
COPB_STAES2.200e-3035.43Probable copper-transporting P-type ATPase B OS=St... [more]
CTPB_MYCTU4.901e-3036.25Cation-transporting P-type ATPase B OS=Mycobacteri... [more]
CTPB_MYCBO4.901e-3036.25Cation-transporting P-type ATPase B OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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