FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_DEIRA (Potassium-transporting ATPase B chain OS=Deinococcus radiodurans GN=kdpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 55/139 (39.57%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  298 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            L  E G  +P  + +   E+     T + V  +D L+GV+ ++D +K       E L +MG+R VM+TGDN  TA A+A+E G+   +A+  P  K + ++  Q  G +VAM+GDG ND+PALA ADVG+A+ +GT  A
Sbjct:  398 LAQERGGQLPPELAAITDEVSRQGATPLTVIENDRLLGVVALSDIIKPGIRERFEQLRRMGLRTVMITGDNPLTAEAIAKEAGVDGFLAEATPEDKMEMIKQEQASGKLVAMMGDGTNDAPALAQADVGLAMNSGTQAA 536          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_HALSA (Potassium-transporting ATPase B chain OS=Halobacterium salinarium GN=kdpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  268 GKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G ++  G    + E   T+P  +      + ES  T + +A D  ++G++ + D +K   A  +  + KMGV  +M TGDN RTA  VA ++GI +  A+  P  K + V   Q DG +V M GDG ND+PALA ADVG+A+ AGT+ A
Sbjct:  430 GTEIRKGAVDAVEEYATTVPGKLRQKSNAISESGGTPLAIAVDGQVVGIIELQDELKPGIADRIAEIQKMGVETIMATGDNQRTARWVADQVGIDEFHAEFDPEEKIELVEDIQDDGKLVGMTGDGTNDAPALAKADVGLAMNAGTNAA 578          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_LEPIN (Potassium-transporting ATPase B chain OS=Leptospira interrogans GN=kdpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R  L+  G  I   +E  +  + +   T IL+  +D L+GV+ + D VK         L KMG+R VM+TGDN  TA A+A E G+ D +A+  P  K   +R  Q  G +VAM+GDG ND+PALA +DVG+A+  GT  A
Sbjct:  407 RNYLHTLGQKISAELEETIQTISQRGSTPILITEEDRLLGVIELKDIVKGGLKERFASLRKMGIRTVMITGDNPLTAAAIAAEAGVDDFLAEATPETKLKKIREQQAKGYLVAMIGDGTNDAPALAQSDVGVAMNTGTQTA 547          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_LEPIC (Potassium-transporting ATPase B chain OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=kdpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R  L+  G  I   +E  +  + +   T IL+  +D L+GV+ + D VK         L KMG+R VM+TGDN  TA A+A E G+ D +A+  P  K   +R  Q  G +VAM+GDG ND+PALA +DVG+A+  GT  A
Sbjct:  407 RNYLHTLGQKISAELEETIQTISQRGSTPILITEEDRLLGVIELKDIVKGGLKERFASLRKMGIRTVMITGDNPLTAAAIAAEAGVDDFLAEATPETKLKKIREQQAKGYLVAMIGDGTNDAPALAQSDVGVAMNTGTQTA 547          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: AHM6_ARATH (Putative copper-transporting ATPase PAA1 OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 75/226 (33.19%), Postives = 119/226 (52.65%), Query Frame = 1
Query:   52 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEE---SARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGI--QDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            E L L A+ E+++ HP+ KA+V+ AR            + Q+   E            F+  PG G    ++ K+V VG  + +   G T      + ++ LEE   + ++ + +  D+ L  V+   D V+ +AA VVE L + G+   M++GD    A+ VA  +GI  + V+A V PA K + +   QK+  IVAMVGDGIND+ ALA+++VG+A+G G   A
Sbjct:  631 EVLMLAAAVESNTTHPVGKAIVKAAR----------ARNCQTMKAED---------GTFTEEPGSGAVAIVNNKRVTVGTLEWVKRHGAT-----GNSLLALEEHEINNQSVVYIGVDNTLAAVIRFEDKVREDAAQVVENLTRQGIDVYMLSGDKRNAANYVASVVGINHERVIAGVKPAEKKNFINELQKNKKIVAMVGDGINDAAALASSNVGVAMGGGAGAA 832          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATSY_SYNP6 (Probable copper-transporting ATPase synA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=synA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 74/227 (32.60%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   40 MDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            +D    L   A+ EA S HPLA A+   A+        +L P               +  SD   +PG G+     G+ + +GN   +  +   +P            +A T I +A D  L+    + D  + EAA VV+ L   G    +++GD   TA A+A+++G++   V+A+V+P  KA A+ + Q  G  VAM+GDGIND+PALA A VG+++ AG+DIA
Sbjct:  497 VDPDRLLQWAAALEADSRHPLATALQTAAQA------ANLAP---------------IAASDRQQVPGLGVSGTCDGRSLRLGNPTWVQVATAKLPTG---------SAAATSIWLADDQQLLACFWLQDQPRPEAAEVVQALRSRGATVQILSGDRQTTAVALAQQLGLESETVVAEVLPEDKAAAIAALQSQGDAVAMIGDGINDAPALATAAVGISLAAGSDIA 693          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATSY_SYNE7 (Probable copper-transporting ATPase synA OS=Synechococcus elongatus (strain PCC 7942) GN=synA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 74/227 (32.60%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   40 MDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            +D    L   A+ EA S HPLA A+   A+        +L P               +  SD   +PG G+     G+ + +GN   +  +   +P            +A T I +A D  L+    + D  + EAA VV+ L   G    +++GD   TA A+A+++G++   V+A+V+P  KA A+ + Q  G  VAM+GDGIND+PALA A VG+++ AG+DIA
Sbjct:  497 VDPDRLLQWAAALEADSRHPLATALQTAAQA------ANLAP---------------IAASDRQQVPGLGVSGTCDGRSLRLGNPTWVQVATAKLPTG---------SAAATSIWLADDQQLLACFWLQDQPRPEAAEVVQALRSRGATVQILSGDRQTTAVALAQQLGLESETVVAEVLPEDKAAAIAALQSQGDAVAMIGDGINDAPALATAAVGISLAAGSDIA 693          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_LISW6 (Potassium-transporting ATPase B chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=kdpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 53/141 (37.59%), Postives = 85/141 (60.28%), Query Frame = 1
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R  +  +G T P   ++ V ++  +  T ++V  ++ ++GV+ + D VK         L KMG++ +M+TGDN  TA A+A E G+ D +A+  P  K + +R +Q++G +VAM GDG ND+PALA ADV +A+  GT  A
Sbjct:  401 RTYVTANGGTYPQECDAIVSKVAGAGGTPLVVVRNNKVLGVIYLKDIVKNGVKERFLDLRKMGIKTIMITGDNPMTAAAIAAEAGVDDFLAEATPEAKLELIREYQREGHLVAMTGDGTNDAPALAQADVAVAMNTGTQAA 541          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_CLOBB (Potassium-transporting ATPase B chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=kdpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  337 ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            +  V  +     T ++VA D+ ++GV+ + D +K+        L KMG++ +M+TGDN  TA A+A E G+ D +A+  P GK + +R FQ  G +VAM GDG ND+PALA ADV +A+  GT  A
Sbjct:  423 DEIVARISNKGGTPLVVAKDNKVLGVVYLKDIIKQGVQEKFADLRKMGIKTIMITGDNPLTAAAIAAEAGVDDFLAEATPEGKLEMIRDFQVKGHLVAMTGDGTNDAPALAQADVAVAMNTGTQAA 548          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB1_LISIN (Potassium-transporting ATPase B chain 1 OS=Listeria innocua GN=kdpB1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 53/141 (37.59%), Postives = 86/141 (60.99%), Query Frame = 1
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R  ++ +G T P   ++ V ++  +  T ++V  ++ ++GV+ + D VK         L KMG++ +M+TGDN  TA A+A E G+ D +A+  P  K + +R +Q++G +VAM GDG ND+PALA ADV +A+  GT  A
Sbjct:  401 RAYVSANGGTYPKECDTIVSKVAGAGGTPLVVVRNNKVLGVIYLKDIVKNGVKERFLDLRKMGIKTIMITGDNPMTAAAIAAEAGVDDFLAEATPEAKLELIREYQREGHLVAMTGDGTNDAPALAQADVAVAMNTGTQAA 541          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
ATKB_DEIRA3.402e-2339.57Potassium-transporting ATPase B chain OS=Deinococc... [more]
ATKB_HALSA4.443e-2338.26Potassium-transporting ATPase B chain OS=Halobacte... [more]
ATKB_LEPIN7.579e-2341.13Potassium-transporting ATPase B chain OS=Leptospir... [more]
ATKB_LEPIC7.579e-2341.13Potassium-transporting ATPase B chain OS=Leptospir... [more]
AHM6_ARATH7.579e-2333.19Putative copper-transporting ATPase PAA1 OS=Arabid... [more]
ATSY_SYNP69.898e-2332.60Probable copper-transporting ATPase synA OS=Synech... [more]
ATSY_SYNE79.898e-2332.60Probable copper-transporting ATPase synA OS=Synech... [more]
ATKB_LISW69.898e-2337.59Potassium-transporting ATPase B chain OS=Listeria ... [more]
ATKB_CLOBB9.898e-2341.27Potassium-transporting ATPase B chain OS=Clostridi... [more]
ATKB1_LISIN9.898e-2337.59Potassium-transporting ATPase B chain 1 OS=Listeri... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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