FC868763

Overview
NameFC868763
Unique NameFC868763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868763_ssr497 microsatellite FC868763_ssr497:497..508. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7230 contig Ccv1_Contig7230:57..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C82A4_SOYBN (Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/193 (24.35%), Postives = 87/193 (45.08%), Query Frame = 2
Query:  155 LGTTDLHKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYN-----NNNKICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWLD 718
            +G+   HK    L+  +GP+F + LG K  +VVS   + ++     D   + R   +   +  +    +  + YGP WR+LRK  V +++S++ ++    +R  EV+N+I +LY+      N      +++ +     +   +  M+ G+   L    T     +    + E M L G   + D  P L WLD
Sbjct:   57 IGSKSPHKALGALAEKHGPLFTIKLGAKKALVVSDWEMARECFTTNDVAVSARPKLLVAELMCYNNAMLLVAPYGPYWRELRKIIVTEILSSSRVEQLQDVRVSEVQNSIVELYDVWRSQKNESDYASVELKQWFAQPIFNMVLRMVVGKRF-LSATATDEKAEKCVKAVDEFMRLAGVFTVGDAIPYLRWLD 248          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C71AL_ARATH (Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=CYP71A21 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 46/183 (25.14%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  173 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQN-MLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWLD 718
            H+    LS  YGP+  L LG    +VVSS  + + +++  D  FA R          + G D+A++ YG  WR+++   V +++SN  + +   +R++E+   +  +  +++         ++++S L+ ++ N ++   AL  K  G T    + K  +  LM+L+G  ++    P L W+D
Sbjct:   53 HRSLCSLSHRYGPLMLLHLGRVPVLVVSSADVARDILKTHDRVFASRPRSKLFEKLFYDGRDVAFAPYGEYWRQIKSVCVLRLLSNKMVTSFRNVRQEEISLMMEKIQKSSSL--------QVNVSELLGSLTNDVISRIALGRKYSGET----DSKELMKRLMMLMGEFSVGTYVPWLGWID 223          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C71BA_ARATH (Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 44/181 (24.31%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  173 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWL 715
            H+   +LS  YGP+  L LG    V+VS+P   KQV++D D     R         ++   DIA+S +   W++LRK  V ++  N  +++   +++ E++  I  +  + ++    +++ +  +S  V    N++      +  +GT +   + +  + E + +LG+ + SD FP + W+
Sbjct:   51 HQSLCKLSKKYGPVMLLKLGRVPTVIVSTPETAKQVLKDYDLHCCSRPSLEGTRKLSYNYLDIAFSRFDDYWKELRKLCVEELFCNKRINSIQPIKEAEMEKLIDSIAESASQKTL-VNLSDTFLSLNV----NVICKAVFGVNFQGTVLNNDKFQDLVHEALEMLGSFSASDFFPYVGWI 226          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C83B1_ARATH (Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  191 LSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILG-VELKFKLAELMVLLGTPNISDIFPMLSWLD 718
            LS +YGPIF + +G +   V+SS  L K++++ QD  F  R         ++ G ++ +  Y   +R++RK  +  + S   + +   +R++E +  +  +Y   ++    +D+ EL +S   C +    +G+     E GT +   +++   L E   LLGT   SD+FP   +LD
Sbjct:   57 LSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQ-SGTVDLSELLLSFTNCVVCRQAFGK--RYNEYGTEMKRFIDI---LYETQALLGTLFFSDLFPYFGFLD 227          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 44/181 (24.31%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  182 FTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNN---KICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWL 715
            + E +  YGPI  +W+G+ L VVVSS  L K+V+++ D   A R    +    +  G D+ W++YGP + K+RK    ++ +   L++   +R+ EV   +  ++ + N      K + + +   +     +  + +G+     E      G+E K  ++  + L  + +I++  P L W+
Sbjct:   51 YYEWAQSYGPIISVWIGSILNVVVSSAELAKEVLKEHDQKLADRHRNRSTEAFSRNGQDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTAMVESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRFMNAEGVVDEQGLEFKAIVSNGLKLGASLSIAEHIPWLRWM 231          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C76C2_ARATH (Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 48/184 (26.09%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  173 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAW-SNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWLDI 721
            H  F +LS  YGPI  L  G+   VVV+SP   ++V+R  D   + R P  +          + W       WR LRK    ++ S   ++A   LR+ +VK  +  +  ++ +  + +DI   +  T +  + N+L+  +++L    +   GV  +  +  +M  +G P+ ++ FP L +LD+
Sbjct:   59 HHSFADLSKTYGPIMSLKFGSLNTVVVTSPEAAREVLRTYDQILSSRTPTNSIRSINHDKVSVVWLPPSSSRWRLLRKLSATQLFSPQRIEATKTLRENKVKELVSFMSESSERE-EAVDISRATFITALNIISNILF--SVDLGNYDSNKSGV-FQDTVIGVMEAVGNPDAANFFPFLGFLDL 238          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C71AP_ARATH (Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=CYP71A25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 46/182 (25.27%), Postives = 87/182 (47.80%), Query Frame = 2
Query:  173 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWLD 718
            H+   +LS  YGP+  L LG    ++VSS  + +++++  D  FA R          +   D+A + YG  WR+++   V  ++SN  + +   +R++E+   +  +  +++    P ++ ++    L C   +++   AL  K  G T    + K     L  LLGT +I    P L+W+D
Sbjct:   51 HRSLCDLSRRYGPLMLLHLGRVPVLIVSSADMAQEILKTHDQAFANRPRSKLSQKLLYNNRDVASAPYGEYWRQMKSVCVIHLLSNKMVRSFRDVREEEITLMMAKIRKSSS---LPFNVSKV----LECLTNDVICRVALGRKYGGET----DFKKLTDRLSELLGTFSIGSFVPWLAWVD 221          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C71D6_SOLCH (Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71D6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  173 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNN 508
            H+   +L+  YGP+  L LG    VVV+SP + K+V++  D  FA R   +A  +  +   DIA+S YG  W+++RK  V +++S  S+ +  ++R  EV   I  + ++++
Sbjct:   53 HRVLRDLAKKYGPLMHLQLGEVSAVVVTSPDMAKEVLKTHDIAFASRPKLLAMDIICYDRCDIAFSPYGEYWKQMRKICVTEVLSAKSVRSFSSIRCDEVVRLIDSIQSSSS 164          
BLAST of FC868763 vs. ExPASy Swiss-Prot
Match: C71A9_SOYBN (Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 49/188 (26.06%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  155 LGTTDLHKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLWGEALELKEKGTTILGVELKFKLAELMVLLGTPNISDIFPMLSWLD 718
            LGT   H+    LS  +GP+  L LG+   +VVSS  + +++ ++ D+ F+ R P +        G+ ++++ YG  WR++RK  + +++S   + +  A+R +EVK  ++ +  ++     P+++ EL++S       N++   AL  + +       ++   L E   +LG     D FP L WL+
Sbjct:   49 LGTLP-HQSLQYLSNKHGPLMFLQLGSIPTLVVSSAEMAREIFKNHDSVFSGR-PSLYAANRLGYGSTVSFAPYGEYWREMRKIMILELLSPKRVQSFEAVRFEEVKLLLQTIALSHG----PVNLSELTLS----LTNNIVCRIALGKRNRSGADDANKVSEMLKETQAMLGGFFPVDFFPRLGWLN 226          
The following BLAST results are available for this feature:
BLAST of FC868763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
C82A4_SOYBN2.324e-1124.35Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=... [more]
C71AL_ARATH2.324e-1125.14Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=C... [more]
C71BA_ARATH3.035e-1124.31Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=C... [more]
C83B1_ARATH3.964e-1126.55Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CY... [more]
C98A3_ARATH5.178e-1124.31Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C76C2_ARATH5.178e-1126.09Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CY... [more]
C71AP_ARATH5.178e-1125.27Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=C... [more]
C71D6_SOLCH6.762e-1132.14Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71... [more]
C71A9_SOYBN6.762e-1126.06Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004E03EF AbioticL1 Citrus clementina cDNA clone C31004E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868763 ID=FC868763; Name=FC868763; organism=Citrus clementina; type=EST; length=721bp
GGATGCCAGAAGCAATGAGAGTTCCATTATCACTTGTTTAGTTTCTGTGC
TTGCCGTGGTTTACTTCGCATGGAATGTGAAAAAATCAAGGAAAGCAAAT
GCTAAACTTCCACCAGGACCTCGCGGCTTGCCTGTAGTCGGATACCTCCC
ATTTCTCGGAACTACTGACTTGCACAAGAAATTCACGGAATTATCCGGAG
TTTATGGTCCGATCTTCAAGCTCTGGCTCGGAAATAAATTATGTGTAGTG
GTGAGCTCACCTTCCCTAGTTAAACAAGTGGTTCGTGATCAAGATACAAC
ATTCGCATACCGTGACCCGCCGATCGCTGGACTAGTGGCCACCTTTGGTG
GCAATGATATTGCATGGTCCAATTACGGTCCCGAATGGAGAAAGTTGCGC
AAATTTTTTGTGGGCAAGATGATGAGTAACGCAAGCCTTGATGCTTGTTA
TGCTCTAAGAAAACAAGAGGTTAAAAATACTATCAGGGATTTGTATAACA
ACAACAACAAAATTTGCAAGCCCATTGACATTGGTGAATTGTCGATTTCA
ACACTGGTATGTGCTATGCAGAACATGCTGTGGGGTGAAGCGCTTGAATT
AAAAGAGAAAGGGACCACTATTCTTGGGGTTGAGCTAAAATTTAAGCTTG
CAGAACTCATGGTGCTACTGGGAACACCGAATATTTCGGATATCTTTCCA
ATGCTTTCATGGCTCGACATA
back to top