FC868766

Overview
NameFC868766
Unique NameFC868766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_CLOSA (Glutamine synthetase OS=Clostridium saccharobutylicum GN=glnA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 66/221 (29.86%), Postives = 115/221 (52.04%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMI---MADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSV 696
            DG+++ G       ++ L P+L +    PW+ Q+  +   + D++   G P+E  PR  L++ +   KE     +N G E EF+L ++    G+      D   Y   A  D      +++   L  +   +E  H E  +GQ EI   +  A   ADN++  + VV+++A++HGL A+F+PK      GSG HV++SL+++G+N F+  D + K+G+S V
Sbjct:   53 DGSSIDGFVRIEESDMNLRPNLDSFVIFPWRPQQGKVARLICDVYKPDGTPFEGDPRHVLKRANADAKE-LGYTMNVGPECEFFLFETD-ENGRATTNTQDKAGYFDLAPTDLGENARRDMTLALEEMGFEIEASHHEVAEGQNEIDFKYGDALTTADNIMTFKLVVKSIAQRHGLHASFMPKPIFGINGSGMHVNMSLFKDGKNAFV--DENDKNGLSKV 269          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_BACCE (Glutamine synthetase OS=Bacillus cereus GN=glnA PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 70/218 (32.11%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   31 MTSAVDGPA--DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMI---MADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            +T A+D     DG+++ G       ++ L PDL T    PW  ++  +   + D++   G P+E  PR  L++V + ++       N G E EF+L K V  +G       D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A ++ D++   + VV+ +ARKHGL ATF+PK      GSG H +LSL++NGENVF
Sbjct:   42 LTKALDNKMMFDGSSIEGFVRIEESDMYLYPDLDTWVIFPWTAEKGKVARLICDIYNADGTPFEGDPRNNLKRVLKEMEALGFSDFNLGPEPEFFLFK-VDEKGNPTLELNDNGGYFDLAPMDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYANAIRSCDDIQTFKLVVKTIARKHGLHATFMPKPLYGVNGSGMHCNLSLFKNGENVF 258          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_METTH (Glutamine synthetase OS=Methanobacterium thermoautotrophicum GN=glnA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 68/217 (31.34%), Postives = 111/217 (51.15%), Query Frame = 1
Query:   58 DGTNLSGTGEIR-----LMPDLSTRWRIPWQKQEEMI---MADMHLKPGEPWEYCPREALRKVSRLLKEEFNL--VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSK 678
            DG+++ G  +I      L PD  T   +PW+ +E+ +   + D++   G+P+E  PR  L+   R L +  +L    N G E EF++L    ++     +P D   Y      D  +   ++++ DL +LN  VE  H E   GQ EI      A K AD +I  ++ ++A+  K G + TF+PK    + GSG H H SL+++GENVF   D+ ++
Sbjct:   55 DGSSVEGFVDINESDLVLKPDPDTFSTLPWRPEEKGVCRFICDIYWPDGKPFEGDPRYVLK---RALDKYAHLGYEYNVGPEPEFFILD---QDEDGNIIPHDCGAYFDVEPVDQGTDFRRKLVMDLEALNFDVEVSHHEVAPGQHEIDFKFDKALKTADAVITFKQAIKAIVDKIGYMVTFMPKPFFGENGSGMHCHQSLFKDGENVFYDPDTETQ 265          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_PYRWO (Glutamine synthetase 1 OS=Pyrococcus woesei GN=glnA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 68/220 (30.91%), Postives = 104/220 (47.27%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRK-VSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVG 699
            DG+++ G       ++    D  T   +PW     +       K  +P+   PR  L++ +  L KE +   +  G E EFYL K   + G  E    D   Y      D    + +E+   + S  +  E LH E GK Q EI   +  A K ADN++  + + +AVA  HGL ATF+PK      G+G H+H+SL ++GENVFM  +  S+  +  +G
Sbjct:   49 DGSSVPGFQGIEDSDLVFKADPDTYVEVPWDNVARVY--GFIYKDNKPYGADPRGILKRALEELEKEGYKAYI--GPEPEFYLFK---KNGTWELEIPDVGGYFDILTLDKARDIRREIAEYMPSFGLIPEVLHHEVGKAQHEIDFRYDEALKTADNIVSFKYITKAVAEMHGLYATFMPKPLFGFPGNGMHLHISLSKDGENVFMGEEGLSEIALHFIG 261          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_BACSU (Glutamine synthetase OS=Bacillus subtilis GN=glnA PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 65/208 (31.25%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMI---MADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG+++ G       ++ L PDL+T    PW  ++  +   + D++   G P+E  PR  L+++ + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A ++ D++   + VV+ +ARKHGL ATF+PK      GSG H +LSL++NG N F
Sbjct:   53 DGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARFICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFK--LDEKGEPTLELNDKGGYFDLAPTDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFGVNGSGMHCNLSLFKNGVNAF 258          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_LACDE (Glutamine synthetase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=glnA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 68/212 (32.08%), Postives = 103/212 (48.58%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEE----MIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASD 666
            DG+++ G       ++ L PDL+T   + W   EE     ++  +H   G P+E  PR  L+KV   ++E        GFE EF+L K   + G+E     D + Y   A+ D  +   +E++  L  L   VE  H E G GQ EI      A   AD L   + VV+ +ARK+ L A+F+ K      G+G H ++SL ++G+N F   D
Sbjct:   54 DGSSIDGFVRLEESDMVLYPDLATWLVLAWTTVEEGTIGRLVCSVHNVDGTPFEGDPRNNLKKVIAEMEEMGFSDFEIGFEAEFFLFKEG-KNGEETTKVSDHSSYFDMASEDEGAKCRREIVETLEKLGFRVEAAHHEVGDGQQEIDFRFDNALATADKLQTFKMVVKTIARKYHLHASFMAKPVEGLAGNGMHTNMSLLKDGKNAFYDKD 264          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAES (Glutamine synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 67/208 (32.21%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG+++ G       ++ L PDL T    PW   Q +   ++ D+    G P+E  PR  L++V R +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVFKTDGTPFEGDPRANLKRVLRRMEDMGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAF 260          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAEQ (Glutamine synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 67/208 (32.21%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG+++ G       ++ L PDL T    PW   Q +   ++ D+    G P+E  PR  L++V R +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVFKTDGTPFEGDPRANLKRVLRRMEDMGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAF 260          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAW (Glutamine synthetase OS=Staphylococcus aureus (strain MW2) GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAU (Glutamine synthetase OS=Staphylococcus aureus GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
The following BLAST results are available for this feature:
BLAST of FC868766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GLNA_CLOSA9.153e-2129.86Glutamine synthetase OS=Clostridium saccharobutyli... [more]
GLNA_BACCE1.561e-2032.11Glutamine synthetase OS=Bacillus cereus GN=glnA PE... [more]
GLNA_METTH7.749e-2031.34Glutamine synthetase OS=Methanobacterium thermoaut... [more]
GLNA_PYRWO2.945e-1930.91Glutamine synthetase 1 OS=Pyrococcus woesei GN=gln... [more]
GLNA_BACSU2.945e-1931.25Glutamine synthetase OS=Bacillus subtilis GN=glnA ... [more]
GLNA_LACDE5.023e-1932.08Glutamine synthetase OS=Lactobacillus delbrueckii ... [more]
GLNA_STAES2.493e-1832.21Glutamine synthetase OS=Staphylococcus epidermidis... [more]
GLNA_STAEQ2.493e-1832.21Glutamine synthetase OS=Staphylococcus epidermidis... [more]
GLNA_STAAW2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus (str... [more]
GLNA_STAAU2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus GN=g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004E06EF AbioticL1 Citrus clementina cDNA clone C31004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868766 ID=FC868766; Name=FC868766; organism=Citrus clementina; type=EST; length=707bp
GGTGTTGGTTTGACATTTGCATGCATGGGAATGACTTCAGCTGTTGATGG
TCCAGCTGATGGGACAAATCTGTCTGGAACTGGTGAGATCAGATTGATGC
CTGATTTATCGACTAGATGGAGAATTCCATGGCAAAAACAAGAGGAGATG
ATTATGGCTGACATGCATCTTAAACCTGGTGAACCGTGGGAATATTGCCC
AAGAGAGGCTCTACGAAAAGTTTCAAGACTTCTGAAAGAGGAGTTTAATT
TGGTACTGAATGCAGGATTTGAAATTGAATTTTATCTCTTAAAGAGTGTA
CTTAGGGAAGGGAAAGAAGAATGGGTGCCAATTGACTTCACACCTTACTG
CTCTACAGCAGCATATGATGCTGTTTCCCCTGTATTTCAAGAAGTCCTCG
CTGACCTTCACTCCTTGAATATTTCTGTGGAACAGTTACATGCAGAAGCT
GGGAAAGGTCAGTTTGAAATTGCTCTGGGCCACACTGTTGCTACAAAAGC
TGCTGACAATTTGATTTTCACACGTGAAGTTGTAAGGGCTGTTGCAAGGA
AACATGGACTGTTGGCAACTTTTGTTCCAAAGTTTGCATTAGATGACATT
GGTTCTGGATCCCATGTGCATCTCAGCTTGTGGCAGAATGGAGAAAATGT
ATTTATGGCATCTGACAGTTCCTCTAAACATGGAATGTCCTCGGTTGGGG
AGAAAGT
back to top