FC868766

Overview
NameFC868766
Unique NameFC868766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAS (Glutamine synthetase OS=Staphylococcus aureus (strain MSSA476) GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAR (Glutamine synthetase OS=Staphylococcus aureus (strain MRSA252) GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAN (Glutamine synthetase OS=Staphylococcus aureus (strain N315) GN=glnA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAM (Glutamine synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=glnA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_STAAC (Glutamine synthetase OS=Staphylococcus aureus (strain COL) GN=glnA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPW---QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 690
            DG+++ G       ++ L PDL T    PW   Q +   ++ D++   G P+E  PR  L++V + +++      N G E EF+L K  L E  E  + + D   Y   A  D      ++++ +L  +   +E  H E   GQ EI   +  A  A DN+   + VV+ +ARKH L ATF+PK      GSG H ++SL++  EN F   D +++ G++
Sbjct:   55 DGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFK--LDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFF--DPNTEMGLT 270          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_HALSA (Glutamine synthetase OS=Halobacterium salinarium GN=glnA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 66/213 (30.99%), Postives = 107/213 (50.23%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEE----MIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLW-QNGENVFMASD 666
            DG+++ G       ++RL PD  T   +PW+   +     ++ D+  + G  +   PR+ L+ V     ++    ++ G E EF+L +    +G       D   Y   A  D  S + +E++  L ++   +E  H E  +GQ EI   +  A   ADN+   R VVRAVA +H + ATF+PK   +  GSG H H+SL+ ++GENVF  +D
Sbjct:   62 DGSSIEGFVRIQESDMRLDPDPETFAVLPWRSNGDGGSARLICDVVDREGNAFAGGPRQVLKNVLARA-DDMGYSVSIGPEPEFFLFEKD-DDGNATTTAHDQGGYFDLAPKDLASDIRREIIFTLEAMGFEIEASHHEVARGQHEINFKYDDALTTADNIATFRAVVRAVAEQHDVHATFMPKPIGEINGSGMHSHISLFDEDGENVFADND 272          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_LACLA (Glutamine synthetase OS=Lactococcus lactis subsp. lactis GN=glnA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 72/223 (32.29%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMI---MADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPI-DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLW-QNGENVFMASDSSSKHGMSSV 696
            DG+++ G       ++ L PDL T    PW  +   +   + D++   GEP+   PR  L++  + +++      N G E EF+L K  L E  E  + + D   Y   A  D      +E++  L  L   VE  H E   GQ EI   +  A KA DN+   + VV+ +ARKHGL ATF+ K      GSG H ++SL+ ++G N F  +D +   G+S V
Sbjct:   54 DGSSIEGFVRINESDMYLYPDLDTWIVFPWGDEYGKVAGVICDVYTPEGEPFAGDPRGVLKRNLKSMEKLGFKSFNLGPEPEFFLFK--LNENDEPTLEVNDKGGYFDLAPTDLAGNTRREIVNVLTDLGFEVEASHHEVAIGQHEIDFKYANALKACDNIQIFKLVVKTIARKHGLHATFMAKPVHGINGSGMHCNMSLFTEDGANAF--ADPTGDMGLSDV 272          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA2_DICDI (Type-1 glutamine synthetase 2 OS=Dictyostelium discoideum GN=glnA2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 66/227 (29.07%), Postives = 107/227 (47.14%), Query Frame = 1
Query:   37 SAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKE-EFNLVLNAGFEIEFYLL----KSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVH--LSLWQNGENVFMASDSSSKHGMSSV 696
            SA D      N +G  ++   PDLST   IPW+    + + D     GEP   CPR  L+KV +   E +F+ V   G E E+Y      KS+L +      P+    +  +    + +  F   LA+L    + +E LH E G G +E A+  + A ++AD  I  +   + +A   G++A+F+ K   D  G   H+H   +  + G+N+F+  D S  + MS +
Sbjct:  129 SAYDNVKFTGNHTGYPDMGARPDLSTFRTIPWEYDVPLFLMDFIGTNGEPLPICPRSTLKKVIKKCHEHQFDPV--QGMEFEWYNYSENNKSLLNKNFSNLEPLSNGMFGYSLLRTSQNSEFMNSLAELQGFGVPLEGLHTETGPGVYEAAIRFSTALESADRAILFKHCTKEIASLQGIMASFMAKPFKDLPGCSGHMHQNFNCLKTGKNLFL--DESDPNHMSDI 351          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA2_MYCTU (Probable glutamine synthetase 2 OS=Mycobacterium tuberculosis GN=glnA2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 70/226 (30.97%), Postives = 103/226 (45.58%), Query Frame = 1
Query:   58 DGTNLSGTGEIR-----LMPDLSTRWRIPW-----QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKE-EFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGE 702
            DG+++ G   +        PD ST   +PW           +  D+ +  G P    PR  LR+  +L K  E         EIEF+LLK    +G    VP+D   Y   A +D+     +  +  L  + ISVE  H E   GQ EI L    A   ADN++  R V++ VA + G  A+F+PK      GS  H H+SL++   N F ++D   +  +S VG+
Sbjct:   52 DGSSIEGFARVSESDTVAHPDPSTFQVLPWATSSGHHHSARMFCDITMPDGSPSWADPRHVLRR--QLTKAGELGFSCYVHPEIEFFLLKPGPEDGSVP-VPVDNAGYFDQAVHDSALNFRRHAIDALEFMGISVEFSHHEGAPGQQEIDLRFADALSMADNVMTFRYVIKEVALEEGARASFMPKPFGQHPGSAMHTHMSLFEGDVNAFHSADDPLQ--LSEVGK 272          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA2_MYCBO (Probable glutamine synthetase 2 OS=Mycobacterium bovis GN=glnA2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 70/226 (30.97%), Postives = 103/226 (45.58%), Query Frame = 1
Query:   58 DGTNLSGTGEIR-----LMPDLSTRWRIPW-----QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKE-EFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGE 702
            DG+++ G   +        PD ST   +PW           +  D+ +  G P    PR  LR+  +L K  E         EIEF+LLK    +G    VP+D   Y   A +D+     +  +  L  + ISVE  H E   GQ EI L    A   ADN++  R V++ VA + G  A+F+PK      GS  H H+SL++   N F ++D   +  +S VG+
Sbjct:   52 DGSSIEGFARVSESDTVAHPDPSTFQVLPWATSSGHHHSARMFCDITMPDGSPSWADPRHVLRR--QLTKAGELGFSCYVHPEIEFFLLKPGPEDGSVP-VPVDNAGYFDQAVHDSALNFRRHAIDALEFMGISVEFSHHEGAPGQQEIDLRFADALSMADNVMTFRYVIKEVALEEGARASFMPKPFGQHPGSAMHTHMSLFEGDVNAFHSADDPLQ--LSEVGK 272          
The following BLAST results are available for this feature:
BLAST of FC868766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GLNA_STAAS2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus (str... [more]
GLNA_STAAR2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus (str... [more]
GLNA_STAAN2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus (str... [more]
GLNA_STAAM2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus (str... [more]
GLNA_STAAC2.493e-1830.91Glutamine synthetase OS=Staphylococcus aureus (str... [more]
GLNA_HALSA3.256e-1830.99Glutamine synthetase OS=Halobacterium salinarium G... [more]
GLNA_LACLA4.252e-1832.29Glutamine synthetase OS=Lactococcus lactis subsp. ... [more]
GLNA2_DICDI9.472e-1829.07Type-1 glutamine synthetase 2 OS=Dictyostelium dis... [more]
GLNA2_MYCTU3.980e-1630.97Probable glutamine synthetase 2 OS=Mycobacterium t... [more]
GLNA2_MYCBO3.980e-1630.97Probable glutamine synthetase 2 OS=Mycobacterium b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004E06EF AbioticL1 Citrus clementina cDNA clone C31004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868766 ID=FC868766; Name=FC868766; organism=Citrus clementina; type=EST; length=707bp
GGTGTTGGTTTGACATTTGCATGCATGGGAATGACTTCAGCTGTTGATGG
TCCAGCTGATGGGACAAATCTGTCTGGAACTGGTGAGATCAGATTGATGC
CTGATTTATCGACTAGATGGAGAATTCCATGGCAAAAACAAGAGGAGATG
ATTATGGCTGACATGCATCTTAAACCTGGTGAACCGTGGGAATATTGCCC
AAGAGAGGCTCTACGAAAAGTTTCAAGACTTCTGAAAGAGGAGTTTAATT
TGGTACTGAATGCAGGATTTGAAATTGAATTTTATCTCTTAAAGAGTGTA
CTTAGGGAAGGGAAAGAAGAATGGGTGCCAATTGACTTCACACCTTACTG
CTCTACAGCAGCATATGATGCTGTTTCCCCTGTATTTCAAGAAGTCCTCG
CTGACCTTCACTCCTTGAATATTTCTGTGGAACAGTTACATGCAGAAGCT
GGGAAAGGTCAGTTTGAAATTGCTCTGGGCCACACTGTTGCTACAAAAGC
TGCTGACAATTTGATTTTCACACGTGAAGTTGTAAGGGCTGTTGCAAGGA
AACATGGACTGTTGGCAACTTTTGTTCCAAAGTTTGCATTAGATGACATT
GGTTCTGGATCCCATGTGCATCTCAGCTTGTGGCAGAATGGAGAAAATGT
ATTTATGGCATCTGACAGTTCCTCTAAACATGGAATGTCCTCGGTTGGGG
AGAAAGT
back to top