FC868766

Overview
NameFC868766
Unique NameFC868766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_THEMA (Glutamine synthetase OS=Thermotoga maritima GN=glnA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQ---KQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVP--IDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASD 666
            DG+++ G       ++ L P L T   +PW     +   ++ D++   G+P+E  PR  LR++     E+      AG E+EF++L       K E VP  +D   Y        V  + +++   L  + I+VE  H E    Q E+   +    + ADN    + V++ +A  HG  ATF+PK      GSG HVH+SL++  +N F   D
Sbjct:   50 DGSSIEGFVRIEESDMYLKPVLDTFAVLPWTVDGAKSARVICDVYTPDGKPFEGDPRYRLRRMMEKA-EQLGYTPYAGPEMEFFILPI---NEKGEPVPEFLDHGGYFDLLPLSKVEEIRRDIAIALEKMGITVEATHHEVAPSQHEVDFRYDTFLRTADNAQTVKLVIKTMAIFHGYHATFMPKPFYGVNGSGMHVHMSLFRGDKNAFYDPD 258          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA3_RHIME (Glutamine synthetase 3 OS=Rhizobium meliloti GN=glnT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   97 MPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAA---YDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVG 699
            +PD S   ++PW+K    + AD  +    P E  PR  L+K+     +E  L +  G E EF+L+     +  + +   +   Y   A    YD ++ +   +L     L     Q   E   GQFE+   +  A + AD   F + +V+++A KHGL ATF+PK      G+G H H+S+W     V   +D+ ++ G+S+ G
Sbjct:   67 LPDASAVIQLPWKKDVAWVAADC-IMDDAPVEQAPRVVLKKLVAEAAQE-GLRVKTGVEPEFFLISPDGSKISDTFDTAEKPCYDQQAIMRRYDVIAEICDYML----ELGWKPYQNDHEDANGQFEMNWEYDDALRTADKHSFFKFMVKSIAEKHGLRATFMPKPFKGLTGNGCHCHISVWDLAGEVNAFADNKAEFGLSAEG 264          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA1_FRAAL (Glutamine synthetase 1 OS=Frankia alni GN=glnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 68/234 (29.06%), Postives = 104/234 (44.44%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYC--PREALRKVSRLLKEEFNLVLNAGF--EIEFYLLKSVLRE--------------------GKEEWVPIDFTP-----YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGK-GQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG+++ G       ++ L+PD  T +  P+++ + + M      P    +Y   PR   +K    L+   ++   A F  E EFY+   V  +                     KEE   + + P     Y      D  + +  E+   L+   I+VE  H E G  GQ EI + +    K ADNL+  + V+R VAR  G   TF+PK   +D GSG HVH SLW++GE +F
Sbjct:   53 DGSSIRGFQAIHESDMLLLPDPQTAFVDPFREHKTLAMTFFIHDPITKEQYSRDPRNIAKKAETYLRGT-SIADTAYFGPEAEFYIFDDVRYDYNPYGSMHHVDSVEAAWNTSRKEEGGNLGYKPRFKGGYFPVPPTDHFTDLRSEMTRVLYETGITVEMQHHEVGTAGQAEIDIRYDTLLKTADNLMLYKYVIRNVARSRGKTVTFMPKPLFEDNGSGMHVHSSLWKDGEPLF 285          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA3_RHILP (Glutamine synthetase 3 OS=Rhizobium leguminosarum bv. phaseoli GN=glnT PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 61/206 (29.61%), Postives = 96/206 (46.60%), Query Frame = 1
Query:   97 MPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRK-VSRLLKEEFNLVLNAGFEIEFYLLK---SVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGE 702
            +PD S+  ++PW+K    + AD  +    P E  PR  L++ V+   KE   L +  G E EF+L+    SV+ +  +      +        YD ++ +   +L     L     Q   E   GQFE+   +    K AD   F + +V++VA KHGL ATF+PK      G+G H H+S+W     V   +D     G+S+ G+
Sbjct:   67 VPDASSVIQLPWKKDVAWVAADC-VMDDRPVEQAPRVVLKRLVAEAAKE--GLRVKTGVEPEFFLISADGSVISDQFDTAEKPCYDQQAVMRRYDVIAEICDYML----ELGWKPYQNDHEDANGQFEMNWEYDDVLKTADKHSFFKFMVKSVAEKHGLRATFMPKPFKGLTGNGCHAHISVWDVDGRVNAFADKEMAFGLSAQGK 265          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA1_RHIME (Glutamine synthetase 1 OS=Rhizobium meliloti GN=glnA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 71/255 (27.84%), Postives = 103/255 (40.39%), Query Frame = 1
Query:    4 VGLTFACMGMTSAVDGPA-DGTNLSGTGEIR-----LMPDLSTRWRIPWQKQEEMIMADMHLKP--GEPWEYCPREALRKVSRLLKEE-FNLVLNAGFEIEFYLLKSV----------LREGKEEWVPIDFTPYCS---------TAAYDAVSPVFQ------EVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASD 666
            V +   C+      DG   DG+++ G   I      LMPD  T    P+  Q  M++    L P  GE +   PR   +K    LK       +  G E EF++   V           +    E    D T Y +            Y  V PV        E+L  L  + ++VE+ H E    Q E+ +      + AD +   + VV  VA  +G  ATF+PK    D GSG HVHLS+W++G+  F   +
Sbjct:   33 VTMDVVCVDEDMFADGVMFDGSSIGGWKAINESDMVLMPDPETAHMDPFFAQSTMVIFCDILDPVSGEAYNRDPRGTAKKAEAYLKASGIGDTVFVGPEAEFFVFDDVKYKADPYNTGFKLDSSELPSNDDTDYETGNLGHRPRVKGGYFPVPPVDSSQDMRSEMLTVLSEMGVTVEKHHHEVAAAQHELGVKFDALVRNADKMQIYKYVVHQVANAYGKTATFMPKPIFGDNGSGMHVHLSIWKDGKPTFAGDE 287          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_FREDI (Glutamine synthetase OS=Fremyella diplosiphon GN=glnA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 66/241 (27.39%), Postives = 112/241 (46.47%), Query Frame = 1
Query:   34 TSAVDG-PADGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEM--IMADMHLKPGEPWEYCPREALRKVSRLL-------------KEEFNLVLNAGFEIE----FYLLKSV---LREGKEEWVPIDFTP-----YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            +S  DG P DG+++ G       ++ ++ D +T W  P+ K+  +  I +    + GE +  CPR   +K    L             + EF +  +A F+      +Y + SV      GK+E   + + P     Y   A  D    +  E+L  + +  + +E+ H E A  GQ E+        +AAD L+  + V++ VA+K+G   TF+PK    D GSG H H S+W++G+ +F
Sbjct:   43 SSFTDGVPFDGSSIRGWKGIEESDMTMVLDPNTAWIDPFMKEPTLSIICSIKEPRTGEWYNRCPRVIAQKAIDYLVSTGLGDTAFFGPEAEFFIFDDARFDQTANSGYYYVDSVEGRWNSGKDEGPNLAYKPRFKEGYFPVAPTDTFQDMRTEMLLTMAACGVPIEKQHHEVATGGQCELGFRFGKLIEAADWLMTYKYVIKNVAKKYGRTVTFMPKPIFGDNGSGMHCHQSIWKDGKPLF 283          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_AQUAE (Glutamine synthetase OS=Aquifex aeolicus GN=glnA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  346 YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSS--SKHGMSSVG 699
            Y      D +  +  E+++ +  L I VE  H E A  GQ EI + +      AD L   + +VR VA KHG  ATF+ K   +D GSG H H S+W+NGEN+F  S+ +  SK  + ++G
Sbjct:  179 YFPAPPVDKMMQLRNEMVSIMSDLGIIVELHHHEVATAGQGEIDIRYDSLLNQADKLFLYKYIVRMVAAKHGKYATFMAKVLPNDNGSGMHTHFSIWKNGENLFAGSEYAGLSKTALYAIG 299          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_SYNY3 (Glutamine synthetase OS=Synechocystis sp. (strain PCC 6803) GN=glnA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 72/250 (28.80%), Postives = 113/250 (45.20%), Query Frame = 1
Query:   52 PADGTNLSGTGEIR-----LMPDLSTRWRIPWQKQE--EMIMADMHLKPGEPWEYCPRE-ALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--------------EGK------EEWVPIDFTP-----YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVG 699
            P DG+++ G   I      ++PD +T    P+ K+    MI +    + GE +   PR  A + V  L        +  G E EF+L   +                EG+      EE   + + P     Y   A  D    +  E+L  +  L + +E+ H E A  GQ E+ +       +ADNL+  + V++ VA+K+G   TF+PK   +D GSG HVH SLW++G+ +F A D  +  G S +G
Sbjct:   51 PFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTIAAKAVEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGNLGYKPGYKQGYFPVAPTDTAQDIRTEMLLTMAGLCVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKYVIKNVAKKYGKTVTFMPKPIFNDNGSGMHVHQSLWKDGQPLF-AGDKYA--GFSQMG 297          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_NEIGO (Glutamine synthetase OS=Neisseria gonorrhoeae GN=glnA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 61/233 (26.18%), Postives = 96/233 (41.20%), Query Frame = 1
Query:   58 DGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKP--GEPWEYCPREALRKVSRLLKE-------------EFNLVLNAGFEIEFYLLKSVLREGKEEWV-------------PIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKG-QFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG+++ G       +++L PD ST +  P+     +++    + P  G+ ++  PR   R+    LK              EF +     FE + +  +  +      W              P     Y   A  D    +   ++  L  L I VE  H+E G G Q EI        K AD     + V++ VA   G  ATF+PK  + D GSG HVH S+W++G+N+F
Sbjct:   54 DGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDVTVVITCDVIDPADGQGYDRDPRSIARRAEAYLKSSGIGDTAYFGPEPEFFVFDGVEFETDMHKTRYEITSESGAWASGLHMDGQNTGHRPAVKGGYAPVAPIDCGQDLRSAMVNILEGLGIEVEVHHSEVGTGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQSIWKDGQNLF 286          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_AZOBR (Glutamine synthetase OS=Azospirillum brasilense GN=glnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 62/233 (26.61%), Postives = 102/233 (43.78%), Query Frame = 1
Query:   58 DGTNLSGTGEIR-----LMPDLSTRWRIPWQKQEEM-IMADMHL-KPGEPWEYCPREALRKVSRLLKEEFNLVLNAGF--EIEFYLLKSVLREGKEEWVPIDFT----PYCSTAAY---------------------DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG++++G   I      L  D +T    P+  Q  + I+ D++    G+P+  CPR  + K +        +   A F  E EF++   V  + +   V  +F     PY S   Y                     D+ S +  E+L+ L  + + VE+ H E    Q E+ +      +  DN+ + + VV  VA  +G  ATF+PK    D GSG H+H S+W+ G+ +F
Sbjct:   52 DGSSIAGWKAINESDMILQLDPTTAVMDPFSAQPTLNILCDVYEPSTGQPYARCPR-GIAKAAEKYMASAGIADTAYFGPEAEFFVFDDVKFKVEMNKVSYEFDSEEGPYTSDKDYEDGNLGHRPGVKGGYFPVAPVDSGSDLRAEMLSVLAEMGVPVEKHHHEVAASQHELGIKFDTLVRTGDNMQYYKYVVHNVAHAYGKTATFMPKPVFGDNGSGMHMHQSIWKEGQPLF 283          
The following BLAST results are available for this feature:
BLAST of FC868766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GLNA_THEMA6.788e-1629.11Glutamine synthetase OS=Thermotoga maritima GN=gln... [more]
GLNA3_RHIME1.280e-1428.92Glutamine synthetase 3 OS=Rhizobium meliloti GN=gl... [more]
GLNA1_FRAAL2.184e-1429.06Glutamine synthetase 1 OS=Frankia alni GN=glnA PE=... [more]
GLNA3_RHILP2.852e-1429.61Glutamine synthetase 3 OS=Rhizobium leguminosarum ... [more]
GLNA1_RHIME3.153e-1327.84Glutamine synthetase 1 OS=Rhizobium meliloti GN=gl... [more]
GLNA_FREDI4.118e-1327.39Glutamine synthetase OS=Fremyella diplosiphon GN=g... [more]
GLNA_AQUAE5.379e-1337.19Glutamine synthetase OS=Aquifex aeolicus GN=glnA P... [more]
GLNA_SYNY37.025e-1328.80Glutamine synthetase OS=Synechocystis sp. (strain ... [more]
GLNA_NEIGO7.025e-1326.18Glutamine synthetase OS=Neisseria gonorrhoeae GN=g... [more]
GLNA_AZOBR2.044e-1226.61Glutamine synthetase OS=Azospirillum brasilense GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004E06EF AbioticL1 Citrus clementina cDNA clone C31004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868766 ID=FC868766; Name=FC868766; organism=Citrus clementina; type=EST; length=707bp
GGTGTTGGTTTGACATTTGCATGCATGGGAATGACTTCAGCTGTTGATGG
TCCAGCTGATGGGACAAATCTGTCTGGAACTGGTGAGATCAGATTGATGC
CTGATTTATCGACTAGATGGAGAATTCCATGGCAAAAACAAGAGGAGATG
ATTATGGCTGACATGCATCTTAAACCTGGTGAACCGTGGGAATATTGCCC
AAGAGAGGCTCTACGAAAAGTTTCAAGACTTCTGAAAGAGGAGTTTAATT
TGGTACTGAATGCAGGATTTGAAATTGAATTTTATCTCTTAAAGAGTGTA
CTTAGGGAAGGGAAAGAAGAATGGGTGCCAATTGACTTCACACCTTACTG
CTCTACAGCAGCATATGATGCTGTTTCCCCTGTATTTCAAGAAGTCCTCG
CTGACCTTCACTCCTTGAATATTTCTGTGGAACAGTTACATGCAGAAGCT
GGGAAAGGTCAGTTTGAAATTGCTCTGGGCCACACTGTTGCTACAAAAGC
TGCTGACAATTTGATTTTCACACGTGAAGTTGTAAGGGCTGTTGCAAGGA
AACATGGACTGTTGGCAACTTTTGTTCCAAAGTTTGCATTAGATGACATT
GGTTCTGGATCCCATGTGCATCTCAGCTTGTGGCAGAATGGAGAAAATGT
ATTTATGGCATCTGACAGTTCCTCTAAACATGGAATGTCCTCGGTTGGGG
AGAAAGT
back to top