FC868781

Overview
NameFC868781
Unique NameFC868781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9397 contig Ccv1_Contig9397:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     + LDLA L SV+ F + F+    PL VLVCNAA +   A   + T +G E +   NHLGHF
Sbjct:  127 VVVTGANSGIGFETAKSFALHGA-HVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATF---ALPWSLTKDGLETTFQVNHLGHF 237          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHF 677
            V+ITGA++G+G  TA+ LA  G   + +ACRD LK E AA    +  +N  ++   LDL+   S+R F + F    + L +L+ NA V + P +K    TA+GFE  +G NHLGHF
Sbjct:   42 VVITGANTGIGKETARELASRGA-RVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSK----TADGFETHLGVNHLGHF 152          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.080e-14
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            +IITGA+SG+G  TAK+ A  G + +I+ACR+  +   A +       K     M LDLASL SV+ F + F+    PL +LVCNAA++         T +G E +   NHLGHF
Sbjct:  127 IIITGANSGIGFETAKSFALHGAY-VILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIF---GSSWCLTEDGLESTFQVNHLGHF 237          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 57/127 (44.88%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  336 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-------AGMAKENYT-----IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 677
            +V+ITGA+SGLG ATA  L   G   +IM CRD  +AE AA         AG A  + T     +  LDLASL SVR F     +    LDVL+ NA V+  P  K    T +GFE+  G NHLGHF
Sbjct:   46 TVLITGANSGLGRATAAELLRLGA-RVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTK----TEDGFEMQFGVNHLGHF 167          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  315 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE-GFELSVGTNHLGHF 677
            K T+   +VI+TGA++G+G  TA  LA+ G  ++I+ACRD  K E AAK       N  +    LDLASL S+R+F     +    +D+LV NAAV     + P +T E GFE+  G N+LGHF
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELAKRGG-NVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAV----MRCPHWTTEDGFEMQFGVNYLGHF 151          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716
            V+ITGA++G+G  TA+ LA  G   + +ACRD LK E AA       +N  ++   LDL+   S+R F + F    + L +L+ NA V L P +K    TA+GFE  +  NHLGHF          K+S
Sbjct:   42 VVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSK----TADGFETHLAVNHLGHFLLTHLLLGRLKES 165          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716
            V+ITGA++G+G  TA+ LA  G   + +ACRD LK E AA       +N  ++   LDL+   S+R F + F    + L +L+ NA V + P +K    T +GFE   G NHLGHF          K+S
Sbjct:   42 VVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSK----TTDGFETHFGVNHLGHFLLTYLLLERLKES 165          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  342 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716
            I+TGA++G+G  TAK LA+ G   + +ACRD  K E AA+       N  +    LDLA   S+R F   F    + L +L+ NA V + P +K    TA+GFE+ +G NHLGHF          K+S
Sbjct:   42 IVTGANTGIGKETAKDLAQRGA-RVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSK----TADGFEMHIGVNHLGHFLLTHLLLEKLKES 164          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 677
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     M LDLA L SV+ F + F+     L VLVCNA  + LP       T +G E +   NHLGHF
Sbjct:  127 VLVTGANSGIGFETAKSFALHGA-HVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWG----LTKDGLETTFQVNHLGHF 237          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 54/130 (41.54%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  336 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA--------KSAGMAKE-------NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 677
            +V+ITGA+SGLG ATA  L   G   +IM CRD  +AE AA        ++A    E          +  LDLASL SVR F     +    LDVL+ NA ++  P  K    T +GFE+  G NHLGHF
Sbjct:   45 TVLITGANSGLGRATAAELLRLGA-RVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMK----TEDGFEMQFGVNHLGHF 169          
The following BLAST results are available for this feature:
BLAST of FC868781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
WWOX_PONAB8.270e-1541.74WW domain-containing oxidoreductase OS=Pongo abeli... [more]
RDH12_HUMAN8.270e-1541.38Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
WWOX_CHICK1.080e-1440.87WW domain-containing oxidoreductase OS=Gallus gall... [more]
RDH14_MOUSE3.143e-1444.88Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 ... [more]
RDH13_MOUSE3.143e-1442.74Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH12_BOVIN3.143e-1438.76Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
RDH12_MOUSE4.104e-1437.98Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH11_MOUSE5.361e-1439.06Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
WWOX_MOUSE2.037e-1341.38WW domain-containing oxidoreductase OS=Mus musculu... [more]
RDH14_HUMAN3.475e-1341.54Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004F12EF AbioticL1 Citrus clementina cDNA clone C31004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868781 ID=FC868781; Name=FC868781; organism=Citrus clementina; type=EST; length=749bp
TCGCCGGGGATTCTCTCAACATTGGTCAGAACAAAAAATCCTTTAGAAAG
AAAGTCTCAACACTAAGCTAGTTAATGGCCCTCCAAGCTGCTGCTTTGGT
TCCCTCTGCTTTCTCAGTCCCCAAAGAGGGTAAAACTAGTGCATCTTTCA
AGGACTCAAGTCTTTTTGGAGTTTCATTCTCAGAACATGCAAAGGCTGAT
TTCAGCTCTTCTGCATTAAGATGCAAGAGAGAATTCAGCCAAAGAAATGG
GGTGGTAAGAGCCCAAACGATGGCTACTGCCTCTCCAGCAGTCGATGTTT
CTTCCCCACAAGGGAAGAAAACTCTCAGAAAAGGCAGCGTTATAATCACC
GGCGCATCGTCTGGATTGGGGCTGGCCACAGCTAAGGCTTTAGCTGAAAC
TGGGAAATGGCATATAATCATGGCCTGCAGGGATTTTCTCAAGGCTGAAA
GAGCCGCCAAGTCGGCTGGCATGGCCAAGGAGAACTACACTATCATGCAT
TTAGATCTGGCTTCCCTTGACAGTGTTCGCCAATTTGTTGATACCTTCAG
GCGATCAGGCAGACCTCTCGATGTGCTAGTTTGCAATGCTGCTGTTTATT
TGCCAACTGCTAAGGAGCCTACATTTACGGCCGAGGGATTTGAACTTAGT
GTTGGAACCAACCATCTTGGTCACTTCCTCCTTTCNACGCTGTTGCTTGA
TGACTTGAAGCAATCTGATTACCCATCAAGCGTCTCATCATCGTTGGCT
back to top