FC868781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15 Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 3 Query: 339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677 V++TGA+SG+G TAK+ A G H+I+ACR+ +A A K + LDLA L SV+ F + F+ PL VLVCNAA + A + T +G E + NHLGHF Sbjct: 127 VVVTGANSGIGFETAKSFALHGA-HVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATF---ALPWSLTKDGLETTFQVNHLGHF 237
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15 Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 3 Query: 339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHF 677 V+ITGA++G+G TA+ LA G + +ACRD LK E AA + +N ++ LDL+ S+R F + F + L +L+ NA V + P +K TA+GFE +G NHLGHF Sbjct: 42 VVITGANTGIGKETARELASRGA-RVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSK----TADGFETHLGVNHLGHF 152
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.080e-14 Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 3 Query: 339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677 +IITGA+SG+G TAK+ A G + +I+ACR+ + A + K M LDLASL SV+ F + F+ PL +LVCNAA++ T +G E + NHLGHF Sbjct: 127 IIITGANSGIGFETAKSFALHGAY-VILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIF---GSSWCLTEDGLESTFQVNHLGHF 237
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14 Identity = 57/127 (44.88%), Postives = 69/127 (54.33%), Query Frame = 3 Query: 336 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-------AGMAKENYT-----IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 677 +V+ITGA+SGLG ATA L G +IM CRD +AE AA AG A + T + LDLASL SVR F + LDVL+ NA V+ P K T +GFE+ G NHLGHF Sbjct: 46 TVLITGANSGLGRATAAELLRLGA-RVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTK----TEDGFEMQFGVNHLGHF 167
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14 Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = 3 Query: 315 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE-GFELSVGTNHLGHF 677 K T+ +VI+TGA++G+G TA LA+ G ++I+ACRD K E AAK N + LDLASL S+R+F + +D+LV NAAV + P +T E GFE+ G N+LGHF Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELAKRGG-NVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAV----MRCPHWTTEDGFEMQFGVNYLGHF 151
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14 Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 3 Query: 339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716 V+ITGA++G+G TA+ LA G + +ACRD LK E AA +N ++ LDL+ S+R F + F + L +L+ NA V L P +K TA+GFE + NHLGHF K+S Sbjct: 42 VVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSK----TADGFETHLAVNHLGHFLLTHLLLGRLKES 165
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14 Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3 Query: 339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716 V+ITGA++G+G TA+ LA G + +ACRD LK E AA +N ++ LDL+ S+R F + F + L +L+ NA V + P +K T +GFE G NHLGHF K+S Sbjct: 42 VVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSK----TTDGFETHFGVNHLGHFLLTYLLLERLKES 165
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14 Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 3 Query: 342 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716 I+TGA++G+G TAK LA+ G + +ACRD K E AA+ N + LDLA S+R F F + L +L+ NA V + P +K TA+GFE+ +G NHLGHF K+S Sbjct: 42 IVTGANTGIGKETAKDLAQRGA-RVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSK----TADGFEMHIGVNHLGHFLLTHLLLEKLKES 164
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13 Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 3 Query: 339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 677 V++TGA+SG+G TAK+ A G H+I+ACR+ +A A K M LDLA L SV+ F + F+ L VLVCNA + LP T +G E + NHLGHF Sbjct: 127 VLVTGANSGIGFETAKSFALHGA-HVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWG----LTKDGLETTFQVNHLGHF 237
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13 Identity = 54/130 (41.54%), Postives = 68/130 (52.31%), Query Frame = 3 Query: 336 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA--------KSAGMAKE-------NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 677 +V+ITGA+SGLG ATA L G +IM CRD +AE AA ++A E + LDLASL SVR F + LDVL+ NA ++ P K T +GFE+ G NHLGHF Sbjct: 45 TVLITGANSGLGRATAAELLRLGA-RVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMK----TEDGFEMQFGVNHLGHF 169 The following BLAST results are available for this feature:
BLAST of FC868781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868781 ID=FC868781; Name=FC868781; organism=Citrus clementina; type=EST; length=749bpback to top |