FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.133e-58
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ +++  EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDYDQ
Sbjct:   53 DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQ 208          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.035e-57
Identity = 107/166 (64.46%), Postives = 129/166 (77.71%), Query Frame = 1
Query:  199 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LCQKRAL+ + LD + WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQ
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQ 185          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.470e-57
Identity = 103/165 (62.42%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  199 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            K ++  L   DPE+  II+ E  RQ   ++LI SENFT+ SV  A+G+ + NKYSEGYPGARYYGGNE+ID  E LCQ+RALEAF + P++WGVNVQ+LSGSP+N QVY AL+KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD
Sbjct:   11 KMVSGHLSETDPEVEQIIKDEVDRQKHSIDLIASENFTTTSVFDALGTPLCNKYSEGYPGARYYGGNEHIDRIERLCQQRALEAFHVTPDRWGVNVQTLSGSPANLQVYQALMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYD 175          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 102/160 (63.75%), Postives = 125/160 (78.12%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L   DPE+ ++++ EK RQ +GLELI SENF   + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K++SA SIFFE+MPY+LN  TG IDY+Q
Sbjct:   49 LSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQ 208          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.010e-56
Identity = 103/165 (62.42%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  199 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            K + + L   DPE+  II+ E  RQ   ++LI SENFTS SV  A+G+ ++NKYSEGYPGARYYGGNE+ID  E LCQ+RAL+AF + P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD
Sbjct:   11 KLITSHLVDTDPEVDSIIKDEIERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYD 175          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.319e-56
Identity = 104/165 (63.03%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  199 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            K +++ L   DPE+  II+ E  RQ   + LI SEN TS +V  A+G+ M NKYSEGYPGARYYGGN++ID  E LCQ+RALEAF + P++WGVNVQSLSGSP+N QVY AL+KPH+R+M L LP GGHLSHGYQT+T+KISAVS +FE+ PYR++  TG IDYD
Sbjct:   11 KLISSHLSESDPEVDAIIKDEIDRQKHSIVLIASENLTSTAVFDALGTPMCNKYSEGYPGARYYGGNQHIDRMELLCQRRALEAFHVTPDRWGVNVQSLSGSPANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTETRKISAVSTYFESFPYRVDPETGIIDYD 175          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.938e-56
Identity = 103/164 (62.80%), Postives = 130/164 (79.27%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYD 693
            L+  ++  DPE+ DI+  E++RQ + + LIPSENFTSV+VM  +GS M NKYSEGYPG RYYGGN+YIDMAESLCQKRALE + LDP KWGVNVQSLSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ     KIS +S +F+TM YR++ +TG +DYD
Sbjct:   36 LSQHVQEFDPEMYDILTKERSRQKRSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMMGLDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVDPATGLVDYD 199          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.545e-56
Identity = 103/155 (66.45%), Postives = 124/155 (80.00%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DP++A+I++ E  RQ + + LI SEN TS +V  A+GS M+NKYSEG PGARYYGGN++ID  E LCQ RALEAF LDP++WGVNVQ LSGSP+N QVY A++  H R+M LDLPHGGHLSHGYQT  +KISAVS +FETMPYR+N  TG IDYD
Sbjct:   22 DPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPGARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLMGLDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDTGLIDYD 176          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.541e-55
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYD 693
            +DPE+ DI+  E+ RQ   + LIPSENFTS SVM  +GS M NKYSEGYPG RYYGGN++IDMAESLCQKRALE + LDP+ WGVNVQ LSG+P+N   Y+A+++ +DR+M LDLPHGGHLSHGYQ  +  KIS +S +F+TMPY ++  TG IDYD
Sbjct:   44 IDPEMYDILTKERKRQKHSITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQTGIIDYD 200          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.328e-53
Identity = 99/160 (61.88%), Postives = 124/160 (77.50%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYD 693
            ++ VDPE+  I+  E++RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGN++ID AESLCQ RAL+ + LDPEKWGVNVQ+LSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ  +  KIS +S +F TMPY +N  TG IDYD
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYD 186          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_BOVIN9.133e-5866.67Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_BOVIN2.035e-5764.46Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_CANGA3.470e-5762.42Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_RABIT7.731e-5763.75Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_YEAST1.010e-5662.42Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC_ASHGO1.319e-5663.03Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYM_ASHGO2.938e-5662.80Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR6.545e-5666.45Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_KLULA5.541e-5563.69Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA2.328e-5361.88Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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