FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAE (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain Newman) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAC (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain COL) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAA9 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain JH9) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAA8 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAA2 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain JH1) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAA1 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPW (Serine hydroxymethyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/154 (44.81%), Postives = 94/154 (61.04%), Query Frame = 1 
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 690
            DP++   IE E  RQ + +ELI SEN+TS  V++A G+ +TNKY+EGYPG RYYGG E++D+ E L   RA E F         NVQ  SGS +N  V+ ALL+  D ++ + L HGGHL+HG       +S     +  + Y ++ESTG IDY
Sbjct:   12 DPQLFAAIEDETRRQEEHIELIASENYTSPRVIEAQGTQLTNKYAEGYPGKRYYGGCEHVDIVEELAISRAKELFGAT----YANVQPHSGSQANAAVFMALLEGGDTVLGMSLAHGGHLTHG-----SHVSFSGKLYNAVQYGIDESTGKIDY 156
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_RHIEC (Serine hydroxymethyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1 
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            N  L  VDPEI   I  E  RQ   +ELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG +++D+AE L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + E    +D D+
Sbjct:   11 NRSLADVDPEIFGAIGKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQFVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVREGDNLLDMDE 164
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PROM5 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 70/159 (44.03%), Postives = 100/159 (62.89%), Query Frame = 1 
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            L+  DP I+++I  EK RQ   LELI SENF S++VMQA GSV+TNKY+EG P  RYYGG E++D  E L  +RA + F  D   W  NVQ  SG+ +N  V+ +LL P D I+ +DL HGGHL+HG       ++    +F  + Y +++ T  ++++
Sbjct:    7 LKKSDPIISNLINSEKNRQETHLELIASENFASMAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAIERAKQLFDAD---W-ANVQPHSGAQANAAVFLSLLNPGDTILGMDLSHGGHLTHG-----SPVNMSGKWFNAVHYGVDKETNKLNFN 156
[Close]
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 74/162 (45.68%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            N  +E  DPEI   I+ E ARQ   +ELI SEN+ S +VM A GS +TNKY+EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ   G+ +N  V+ A LKP D IM + L  GGHL+HG       ++    +F  + Y LN+    IDYD
Sbjct:    5 NILVEQTDPEIFAAIQAENARQEHHIELIASENYASPAVMAAQGSQLTNKYAEGYPGRRYYGGCEYVDVAEQLAIDRIKQIFGAD----AANVQPHCGASANEAVFLAFLKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVSYGLNDKE-EIDYD 156
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_STAAE1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAC1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA91.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA81.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA21.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA11.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_SHEPW1.163e-2844.81Serine hydroxymethyltransferase OS=Shewanella piez... [more]
GLYA_RHIEC1.163e-2844.17Serine hydroxymethyltransferase OS=Rhizobium etli ... [more]
GLYA_PROM51.163e-2844.03Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_POLSJ1.163e-2845.68Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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