FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 80/160 (50.00%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y ++  TG ID ++
Sbjct:    6 LQKQDSELFEAIAKETGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMYEAHSYGVDRETGCIDMNK 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/160 (46.88%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  DP +A++I HE  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++
Sbjct:    4 LETFDPAVAEVIRHETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.197e-34
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPEI D+I  E  RQ  GLELI SENF S++V++A+GSV+TNKY+EGYPG RYYGG E++D+AE L + RA E F +       NVQ  SGS +N   Y A+ +P D IM + L HGGHL+HG       ++     +  +PY +N  T  IDYD+
Sbjct:    9 DPEIYDVILKEWERQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG-----ASVNFSGRIYNVVPYGVNPETEVIDYDE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.197e-34
Identity = 78/157 (49.68%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            VDPE+A+ IE E+ARQ   LELI SENF S +VM A GSVMTNKY+EG PGARYYGG EY+D+ E L + R  E F  +      NVQ  SG+ +N  VY A L+P   IM ++L HGGHL+HG      K++    +F  + Y +N  T  IDY++
Sbjct:   11 VDPEVAEAIEKEEARQNNKLELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAE----HANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG-----SKVNISGKYFNIVDYGVNRDTERIDYEE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.197e-34
Identity = 74/156 (47.44%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            +DP++A  +  E+ RQ   +EL+ SENF S +V QA GSV+TNKYSEGYPG RYYGGNEYID+AE+L  +RA E F +       NVQ  SGS +NF+ Y A L P D+I+ ++L  GGHL+HG       +S     +E   Y+++  T  +DYD
Sbjct:    6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTHG-----ASVSFSGKMYEAQSYKVDSETELLDYD 152          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.197e-34
Identity = 78/156 (50.00%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  + F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKQIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNKETGRVDYDQ 150          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 78/160 (48.75%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE +DPEIAD+I  E+ RQ   LELI SENF S +V +A GSV+TNKY+EGYPG RYYGG E++DMAE L Q+RA + F  D E    NVQ  SGS +N  ++ A+L+P D ++ +DL  GGHL+HG       +S     +  + Y + + T  ID+DQ
Sbjct:    4 LERIDPEIADVICEEEKRQRGKLELIASENFVSEAVREAQGSVLTNKYAEGYPGKRYYGGCEFVDMAERLAQERAKKLF--DAEY--ANVQPHSGSQANMAIFFAVLQPGDTVLGMDLRQGGHLTHG-----SPVSFSGKLYNVVSYGVRKDTEQIDFDQ 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPD (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 78/157 (49.68%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 687
            L++ D E+ + + +E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F        VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y +   TG ID
Sbjct:    6 LQMQDKEVFEAVVNETVRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFNCS----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SPVNFSGQLYEAHSYGVRRETGCID 153          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 82/160 (51.25%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D  I D I  E  RQ + LELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  A+LKP DRIM LDL HGGHL+HG      K++     FE   Y ++  TG ID ++
Sbjct:    6 LQRQDKGIFDAITAEVRRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTHG-----SKVNFSGQLFEAHSYGVDRETGCIDMNK 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_DESDA (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 78/155 (50.32%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DPEIA  I  E  RQ   LELI SEN  S +V +A GSV+TNKY+EGYPG RYYGG EY+DM E+L Q+RA   F    +   VNVQ  SGS +N   Y A+LKP D I+ +DL HGGHL+HG       ++     F+ + Y +   TG IDYD
Sbjct:    8 DPEIAKAIALESQRQMGKLELIASENIVSTAVREAQGSVLTNKYAEGYPGKRYYGGCEYVDMVETLAQERAKLLF----DAQYVNVQPHSGSQANMAAYLAVLKPGDTILGMDLSHGGHLTHG-----SPVNFSGRLFKIISYGVQRETGRIDYD 153          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PELPB7.042e-3450.00Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_GEOSM7.042e-3446.88Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_THEAB9.197e-3448.72Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_SYNWW9.197e-3449.68Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_OENOB9.197e-3447.44Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]
GLYA_BACV89.197e-3450.00Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_SYNFM1.569e-3348.75Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_CHLPD1.569e-3349.68Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_CHLPB1.569e-3351.25Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_DESDA2.049e-3350.32Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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