FC868811

Overview
NameFC868811
Unique NameFC868811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:34..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.049e-28
Identity = 62/126 (49.21%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  294 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAA 668
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAA 159          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 62/133 (46.62%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  276 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAA 668
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAA 203          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  366 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 662
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDF 129          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  366 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 662
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDF 129          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  375 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAA 668
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQA 133          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  375 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 662
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDF 132          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  366 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 662
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDF 132          
BLAST of FC868811 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  351 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAA 668
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQA 133          
The following BLAST results are available for this feature:
BLAST of FC868811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSBO_CHLRE4.049e-2849.21Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR5.473e-2546.62Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB4.200e-1743.56Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN4.200e-1743.56Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP7.921e-1642.16Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY32.157e-1340.82Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA56.276e-1340.59Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE71.071e-1237.04Photosystem II manganese-stabilizing polypeptide O... [more]

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Properties
Property NameValue
Genbank descriptionC31005A11EF AbioticL1 Citrus clementina cDNA clone C31005A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868811 ID=FC868811; Name=FC868811; organism=Citrus clementina; type=EST; length=670bp
CTCGCCGGGGAGTTTGTTTCTTAGAAGATAAAGCGATACTAGCAAGTAAC
CCACAAGTGGTAGGGAGCAAGATGGCAGCCTCGTTACAAGCCGCAGCTAC
ACTGATGCAACCCACCAAGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCC
TGCAGCTGAGGTCTTCACAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCA
GCTGGTGCTAGGATCTCTTGCTCTTTGAATAATGACTTGAAGGATTTGGC
TCAGAAATGTGTTGATGCTACCAAGATCGCTGGCTTTGCCCTCGCCACTT
CTGCTCTCGTCGTTTCGGGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTA
ACCTATGATGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGG
AACTGCTAACCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTTTGCCT
TCAAACCTGGCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAACTTCC
TTCACTGTCAAGGCTGAGGGTGTCAACAAGAATGCCCCACCAGATTTCCA
GAACACCAAGCTCATGACCCGCCTTACCTACACCCTTGACGAGATTGAGG
GACCTTTTGAAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGAAGGAT
GGAATTGACTATGCTGCTGT
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