FC868812

Overview
NameFC868812
Unique NameFC868812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:106..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 49/170 (28.82%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   43 PDRYIRPDQDSPLISDDILISQIPVIDMQSLLSKE-SMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVH--LRKPHLFPKLPPSLRETLEVYS---MELKTLAENLISKMGEVL 531
            P ++I P+ +SP   D      +P+ID+  +LS + +  +E+ +L   AC+  GFFQ+VNHG+    L +  + V+ FF   + EK++  + PG+  G+  +F      KL W +  S  + P    L   ++   L    R   EVY+    E+  L+  ++  +GE L
Sbjct:   18 PSQFIWPEGESPT-PDAAEELHVPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESL 186          
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 49/170 (28.82%), Postives = 86/170 (50.59%), Query Frame = 1
Query:   43 PDRYIRPDQDSPLISDDILISQIPVIDMQSLLSKESMDS-ELAKL-DFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVH--LRKPHLFPKLPPSLRETLEVYS---MELKTLAENLISKMGEVL 531
            P ++I P+ +SP   D      +P+I++  +LS ++  + E+ +L   AC+  GFFQ+VNHG+    L +  + V+ FF   + EK++  +RPG+  G+  +F      KL W +  S  + P    L   ++   L    R   EVY+    E+  L+  ++  +GE L
Sbjct:   18 PSQFIWPEGESPT-PDAAEELHVPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESL 186          
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   16 LVKNPALF-----APDRYIRPDQDSPLISDDILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFS 390
            L+ NP+L       P+++I PD++ P I  DI    +P ID+ S  S       +A+   AC + GFF +VNHG+S + + +  + +E FF+  +  K+K  ++PG+  G+  +F      KL W +  S
Sbjct:   29 LIFNPSLLNLQSQIPNQFIWPDEEKPSI--DIPELNVPFIDLSSQDSTLEAPRVIAE---ACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPWKETLS 153          
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 37/160 (23.12%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   52 YIRPDQDSPLISDDILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVL 531
            ++R + + P ++ D     +P+I +  +           ++  AC++WG FQ+++HG+    + ++ +    FF    E+K +Y    G   GF  +  +  E   DW ++ +  + PV  R    +P+ P      +E YS  L  L+ NL+  + E +
Sbjct:   24 FVRDEDERPKVAHDRFSDAVPLISLHGIDGARRAQIR-DRVAAACEDWGIFQVIDHGVDADLIADMTRLAREFFALPAEDKLRYDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVKARDYGRWPEKPAGWCAVVERYSERLMGLSCNLMGVLSEAM 182          
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  100 ISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVL 531
            +   P+I++++L   E  D+ +  +  AC+ WGFF+LVNHG+    ++ ++K  +G +   ME++ K       +E      V +E   LDW   F +  LPV        P L    RE +  ++  L+ LAE L+  + E L
Sbjct:    1 MENFPIINLENLCGAER-DATMEMIKDACENWGFFELVNHGIPHEVMDTVEKFTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLPV--SNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENL 136          
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   76 PLISDDILISQIPVIDMQSLLSKESM--DSELAKLDFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEG-FGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVL 531
            PL SD + +  IP ID+     ++++  ++ + ++  A  +WGFFQ++NHG+S   LE++KK V  F   S E +K+++ R       +   F +      +W D FS  T+     KP     LP   R+ +  YS ++  L + L   + E L
Sbjct:   53 PLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFS-CTMAPDTPKPQ---DLPEICRDIMMEYSKQVMNLGKFLFELLSEAL 203          
BLAST of FC868812 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  100 ISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEELKKEVEGFFNHSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVL 531
            +   P++DM  L + E   S +  +  AC+ WGFF+ VNHG+S   ++ ++K  +  +   ME++ K       +E      V SE   LDW   F +  LPV        P L    R+ ++ ++++L+ LAE L+  + E L
Sbjct:    1 MENFPIVDMGKL-NTEDRKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQRFKEMVATKGLE-----CVQSEIDDLDWESTFFLRHLPVSSISE--IPDLDDDYRKVMKEFALKLEELAEELLDLLCENL 136          
The following BLAST results are available for this feature:
BLAST of FC868812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GAO1D_WHEAT1.697e-1128.82Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT1.697e-1128.82Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAOX2_ARATH4.938e-1131.54Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
FL3H_HORVU4.938e-1123.13Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
ACCO4_PETHY6.449e-1129.171-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCH3_ARATH6.449e-1129.031-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_PEA8.423e-1129.171-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]

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Properties
Property NameValue
Genbank descriptionC31005A12EF AbioticL1 Citrus clementina cDNA clone C31005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868812 ID=FC868812; Name=FC868812; organism=Citrus clementina; type=EST; length=534bp
CCTTGTGTTCAAGAGTTGGTCAAGAATCCGGCGTTATTTGCCCCCGACAG
ATACATACGTCCAGATCAAGATTCACCCCTCATTTCTGATGATATTTTGA
TTTCACAGATACCAGTTATTGACATGCAAAGCTTACTTTCTAAAGAATCA
ATGGACTCTGAGTTAGCCAAGCTCGACTTCGCATGCAAAGAATGGGGTTT
TTTCCAGCTGGTAAATCATGGAATGAGCACAGCATTTCTAGAAGAATTAA
AGAAAGAGGTTGAGGGATTCTTCAATCACAGCATGGAAGAAAAGAAAAAA
TATTGGCAGCGTCCAGGAGATATGGAAGGATTTGGACAAGCCTTTGTTGT
ATCGGAGGAACAAAAGCTTGATTGGGCTGACCTTTTCTCCATGATGACTC
TTCCAGTTCATCTGAGGAAACCACATTTATTTCCTAAGCTCCCTCCTTCC
CTCAGAGAGACCTTGGAAGTTTACTCAATGGAATTAAAAACCCTAGCCGA
GAACCTAATATCGAAAATGGGAGAAGTGTTAAAT
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