FC868814

Overview
NameFC868814
Unique NameFC868814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7605 contig Ccv1_Contig7605:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: DR9C7_BOVIN (Short chain dehydrogenase/reductase family 9C member 7 OS=Bos taurus GN=SDR9C7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 52/167 (31.14%), Postives = 84/167 (50.30%), Query Frame = 3
Query:   84 VLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDI--IVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            V ITG   G G  LA++L  RG  V+    T++    LQ +       + L  D+    S++   + V ++ G   +  +VNNAG    +     ++ E+F  VI+ N+ G+  +  H +P M+   +G +VNMSS  GR  A +   YC SK+ VE  S S+ +E+
Sbjct:   28 VFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSYQLQTILL--DVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVNLVGLIEVTLHMLP-MVKKARGRVVNMSSSGGRV-AVIGGGYCISKFGVEAFSDSIRREL 190          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQ-DKLTSLQSELPNPDHHLFLNVDIRSNSSVEELA-RLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            R  L+TG S  +G A+A+ L  +G  ++G   TQ +KL +L +EL   D       ++ +   V+ L  R   + +GV DI+VNNAG I K+     ++  ++D V++ N+  +  + R     MI  + G I+N++S  G  G      YCASK  + G S+S+A+E+
Sbjct:    7 RKALVTGASGAIGGAIARVLHAQG-AIVGLHGTQIEKLETLATELG--DRVKLFPANLANRDEVKALGQRAEADLEGV-DILVNNAG-ITKDGLFLHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQTNYCASKAGMIGFSKSLAQEI 170          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 58/185 (31.35%), Postives = 84/185 (45.41%), Query Frame = 3
Query:   30 TMAATTPFNGIGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPN--PDHHLFLNV-DIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE 575
            T + TT F        R VLITG   GLGRA A  LA  G  +     + + L + ++ +    PD  +   V D+   + VE       E+ G  D   NNAG   K N     +  EFD V+  N++G+   L   + +M     G++VN +S  G  G    + Y A+K  V GL+R+ A E
Sbjct:    4 TSSPTTRFT------DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVE 182          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: FABG_MYCTU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium tuberculosis GN=fabG PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 55/182 (30.22%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   33 MAATTPFNGIGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            M AT         VSR+VL+TG +RG+G A+AQ LA  GH V    R              P     +  D+  + +V+     V E +G  +++V+NAG ++ +  +  ++ E+F+ VI+ N+ G   + +     M   K G ++ + S  G  G    A Y ASK  V G++RS+A+E+
Sbjct:    1 MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA----------PKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG-LSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIAREL 171          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: FABG_MYCBO (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium bovis GN=fabG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 55/182 (30.22%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   33 MAATTPFNGIGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            M AT         VSR+VL+TG +RG+G A+AQ LA  GH V    R              P     +  D+  + +V+     V E +G  +++V+NAG ++ +  +  ++ E+F+ VI+ N+ G   + +     M   K G ++ + S  G  G    A Y ASK  V G++RS+A+E+
Sbjct:    1 MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA----------PKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG-LSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIAREL 171          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: FABG_MYCAV (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium avium GN=fabG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 3
Query:   72 VSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            VSR+VL+TG +RG+G A+AQ LA   H V    R              PD    +  D+  N +V+     V E +G  +++V+NAG I+K+  +  ++ E F  VI+ N+ G   + +     M   + G I+ + S  G  G    A Y A+K  + G++RS+++E+
Sbjct:   22 VSRSVLVTGGNRGIGLAIAQRLAAEAHKVAVTHRGSGA----------PDGLFGVECDVTDNDAVDRAFTEVEEHQGPVEVLVSNAG-ISKDAFLIRMTEERFTEVINANLTGAFRVTQRAARSMQKKRFGRIIYIGSVSGMWGIGNQANYAAAKAGLIGMARSISREL 179          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: DHSO_RHOSH (Sorbitol dehydrogenase OS=Rhodobacter sphaeroides GN=polS PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 3
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPI-KQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRS 563
            +T LITG +RG+GRA A+   + G  V       +   +  +E+      + L  D+   +S++     ++++ G  DI+VNNA   +    I +++ E +D +   NV G   M++     MI   + G I+NM+S  GR G ALV  YCA+K AV  L++S
Sbjct:    6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIAL--DVTDQASIDRCVAELLDRWGSIDILVNNAALFDLA-PIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQS 165          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 47/174 (27.01%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRG-HTVIGCSRTQDKLTSLQSELPN-PDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKE 575
            + K  S  V++TG SRG+G+A+A  L K G   ++  +R+  +   +  ++       +    D+   + V+ + +  V+K G  D++VNNAG    +  +  +   ++D V+D N+ G+    +    +M+  ++G I+N++S  G  G    A Y A+K  V G S++ A+E
Sbjct:    9 VPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGQAITFGGDVSKEADVDAMMKTAVDKWGTIDVVVNNAG----DTLLIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAARE 178          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: DHB13_MOUSE (17-beta hydroxysteroid dehydrogenase 13 OS=Mus musculus GN=Hsd17b13 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   66 KSVS-RTVLITGVSRGLGRALAQELAKRGHTVI-------GCSRTQDKLTSLQSELPNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            KSV+ +TVLITG   G+GR  A E AK+   ++       G   T DK   L + +     H+F+ VD  + + +      V  + G  +I+VNNAG I   + +     EE     + N+ G   +++  +P M+    G IV ++S  G      + PYC+SK+A  G  R++  E+
Sbjct:   32 KSVTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINKRGVEETADKCRKLGAVV-----HVFV-VDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLL-SAKDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAEL 203          
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 47/171 (27.49%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   60 IGKSVSRTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSEL-PNPDHHLFLNVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKNNKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVA 569
            +G+  ++T +ITG + G+G+A A+  A  G  VI     +D++      +  N       ++D+   +SV+  A  + +  G  DI+ NNAG   +  K+ +   + FD +I  +++G     ++ IPLM+    G I+N SS  GR+     + Y A+K  +  L++++A
Sbjct:    1 MGRLENKTAVITGAATGIGQATAEVFANEGARVIIGDINKDQMEETVDAIRKNGGQAESFHLDVSDENSVKAFADQIKDACGTIDILFNNAGVDQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLMLE-NGGSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMA 170          
The following BLAST results are available for this feature:
BLAST of FC868814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
DR9C7_BOVIN1.475e-1231.14Short chain dehydrogenase/reductase family 9C memb... [more]
NODG_RHIME1.927e-1232.54Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]
LVR_LEIAQ1.927e-1231.35Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
FABG_MYCTU1.927e-1230.223-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_MYCBO1.927e-1230.223-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_MYCAV1.927e-1230.773-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
DHSO_RHOSH1.927e-1231.90Sorbitol dehydrogenase OS=Rhodobacter sphaeroides ... [more]
FABG4_BRANA2.516e-1227.013-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
DHB13_MOUSE2.516e-1230.1717-beta hydroxysteroid dehydrogenase 13 OS=Mus mus... [more]
YXBG_BACSU3.286e-1227.49Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC31005B02EF AbioticL1 Citrus clementina cDNA clone C31005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868814 ID=FC868814; Name=FC868814; organism=Citrus clementina; type=EST; length=687bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAATCCTGGTGTTATTACACTGACATGCTTACGTCCTGCTTTGGCAC
TTCTGCTGCATCATACCAGCACCTGATGCATGGGCTT
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