FC868818

Overview
NameFC868818
Unique NameFC868818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:248..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLI 166          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLI 166          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLI 166          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 74/168 (44.05%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+ELLR  GI+FE++   G+D   F++L+M SGL+ ++SV+W+T+H+AYD G+L+
Sbjct:  161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLI 315          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 76/168 (45.24%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVWA NLE E + I QV  ++ +I+MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+
Sbjct:   14 EVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLI 166          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL M+SG+V  E V W++FHS YDFGYL+
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLI 166          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.518e-33
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL M+SG+V  E V W++FHS YDFGYL+
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLI 166          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 65/166 (39.16%), Postives = 99/166 (59.64%), Query Frame = 3
Query:  180 VWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            V+ SN+E EF  I   ++ YP+++MDTEFPG+V  P         FR ++  ++ +V   NV+ L LIQVG  + +  G LP  G       +W+FNF +F  A D  + +S+E+LR  GIDF   +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+
Sbjct:   26 VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQQVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLL 177          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 57/169 (33.73%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLV 677
            R VW SN++ E   +++ + R+P I+ DTE+PG+++R   D S+          + Y+ +K NV+   LIQ G TL ++ G +     GG    +WE NF +F   +D     SIE LR  G+D ++ R EGVD   +     + +     + V +VTF  AYDF Y +
Sbjct:   10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFL 160          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 54/155 (34.84%), Postives = 75/155 (48.39%), Query Frame = 3
Query:  213 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            LI   +  Y FI++DTEFP  +         R   +     + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF +  DA    SIE LR  G+D  + R+EG+    F   M         +++WVTFH +YD  YL+
Sbjct:    3 LIEDCLRSYRFIAIDTEFPSTL---------RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLL 138          
The following BLAST results are available for this feature:
BLAST of FC868818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_HUMAN3.885e-3445.24CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK3.885e-3445.24CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN3.885e-3445.24CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
POP2_YEAST8.656e-3444.05Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_DANRE8.656e-3445.24CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_XENLA1.928e-3344.64CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_XENTR2.518e-3344.64CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_CAEEL2.697e-2739.16CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH8.403e-2133.73Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1H_ARATH8.139e-1634.84Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC31005B06EF AbioticL1 Citrus clementina cDNA clone C31005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868818 ID=FC868818; Name=FC868818; organism=Citrus clementina; type=EST; length=677bp
GAACTCTCAAGCATCAGCAGTTTCCAGCAACAGTAAGGACTTTCAAATCT
CACCCACGAAGCGTCGAGCTGCAAGCTATTAGCTGACCATCATCACTCAT
CATGGGAGTTGAAGATTTTTCTACGGATTTAGATTCAAATTCAAATTCCA
GCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAA
TCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTC
CATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCT
CCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTT
CTGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCT
CTCTGACTCTTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATA
AATTCATCTGGGAGTTCAACTTCCGGGACTTCGATATCGCGACGGACGCC
CACGCGCCGGATTCGATAGAGCTGCTGAGACTGCAGGGGATTGACTTTGA
GCGCAACAGGAAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGA
TGTCGTCGGGACTCGTCTGTAACGAATCGGTGAGTTGGGTCACGTTCCAC
AGCGCGTACGATTTCGGGTACCTGGTT
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