FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASPOR (ATP-dependent rRNA helicase spb4 OS=Aspergillus oryzae GN=spb4 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 99/229 (43.23%), Postives = 132/229 (57.64%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M   P    +   +  + P+LSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H +  +IISPTREL+SQIYHV    +                         STL  V  +LL G      D+ K  ++  NLL+ TPGRL +++    V     + E+LVLDEADRLLD+GF++ +  II RLPK RRTGLFS+
Sbjct:    1 MAPKPPAGTSSRAWDGVSPSLSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPIVEKLLRLEEPIKKHHVGAIIISPTRELASQIYHVLLSLLAFHPPSASVINPSEDDDVPRQKFPSSTLKVVPQLLLGGSTTPAEDLSKFLKQSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNIIRRLPKQRRTGLFSA 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASPCL (ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus GN=spb4 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 98/229 (42.79%), Postives = 132/229 (57.64%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M  NP K  +   +  + P LSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H I  +IISPTREL+SQI+ V Q  +                         STL  V  +LL G      D+ +  +   N+L+ TPGRL +++    V     + E+LVLDEADRLLD+GF++ +  I+ RLPK RRTGLFS+
Sbjct:    1 MAPNPPKGTSSRAWDAVTPPLSEWVLEAMSSMGFARMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLLPIVEKLLRLEEPIKKHHIGAIIISPTRELASQIHSVMQSLLAFHPPSAAAMTPLDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSRFLKLSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSA 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_NEOFI (ATP-dependent rRNA helicase spb4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=spb4 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 97/229 (42.36%), Postives = 130/229 (56.77%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M   P    +   +  + PALSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H I  +IISPTREL+SQIY+V    +                         STL  V  +LL G      D+    +   N+L+ TPGRL +++    V     + E+LVLDEADRLLD+GF++ +  I+ RLPK RRTGLFS+
Sbjct:    1 MAPKPPSGTSSRAWDAVTPALSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHIGAIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSA 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_DROME (Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila melanogaster GN=CG9630 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 92/208 (44.23%), Postives = 131/208 (62.98%), Query Frame = 3
Query:   90 LTETRFSDL-KPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARK--PHQIMGMIISPTRELSSQIYHVAQPFI--STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-----VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            ++  ++S L KP LS+ VL+ +   GF+  TPVQ A IPLL + KDV+ +A TGSGKTLAF+VP++EIL+R        P +I  ++ISPTREL+ QI  V   F+    L  +   L+VGG  ++ D+  +  E   +L+ TPGRL D+ +R           ++LE LVLDEADRLLD+GF+  ++ I+  LP+ RRTGLFS+  T
Sbjct:    1 MSRKKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRTGLFSATQT 208          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASPFU (ATP-dependent rRNA helicase spb4 OS=Aspergillus fumigatus GN=spb4 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 96/229 (41.92%), Postives = 130/229 (56.77%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M   P    +   +  + PALSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H +  +IISPTREL+SQIY+V    +                         STL  V  +LL G      D+    +   N+L+ TPGRL +++    V     + E+LVLDEADRLLD+GF++ +  I+ RLPK RRTGLFS+
Sbjct:    1 MAPKPPSGTSLRAWDAVTPALSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSA 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASPNC (ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=spb4 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 96/230 (41.74%), Postives = 129/230 (56.09%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI--------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M   P    +   +  + PALSE VL+A+A  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H +  +IISPTREL+SQIY+V    +                          STL  V  +LL G      D+    +   NLL+ TPGRL +++    V     + E+LV+DEADRLLD+GF+  +  I+ RLPK RRTGLFS+
Sbjct:    1 MAPKPPPGTSARAWDGVTPALSEWVLDAVASMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKHHVGAIIISPTRELASQIYNVLTSLLAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVMDEADRLLDLGFKDTLQNILRRLPKQRRTGLFSA 230          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_SCLS1 (ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.647e-38
Identity = 93/210 (44.29%), Postives = 125/210 (59.52%), Query Frame = 3
Query:  114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI----------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L P+L+E +L+A+   GFE  TPVQA+TIPL    KDV V+A TGSGKTL+F++P+VE L R     K H +  +I+SPTREL++QI+ V    +                      STL  V  +LL G      D+ +  +   NLLI TPGRL +++    V     + E+LVLDEADRLLD+GF+  +  I+SRLPK RRTGLFS+
Sbjct:   17 LTPSLAEWILDAIKSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIVSPTRELATQIHSVLTSLLAFHEPSAGALKPLEEGEKRKPSSTLRVVSQLLLGGTTTPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDLQKILSRLPKQRRTGLFSA 226          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_BOTFB (ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain B05.10) GN=spb4 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 92/210 (43.81%), Postives = 125/210 (59.52%), Query Frame = 3
Query:  114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI----------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L P+L+E VL+A++  GFE  TPVQA+TIPL    KDV V+A TGSGKTL+F++P+VE L R     K H +  +I+SPTREL++QI+ V    +                      STL  +  +LL G      D+ +  +   NLLI TPGRL +++    V     + E+LVLDEADRLLD+GF+  +  I+ RLPK RRTGLFS+
Sbjct:   17 LTPSLAEWVLDAISSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKHHVGAIIVSPTRELATQIHSVLTSLLKFHEPSAEALQPLEEGEKRKPSSTLRVIPQLLLGGTTTPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDLQKILGRLPKQRRTGLFSA 226          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_AJECN (ATP-dependent rRNA helicase SPB4 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SPB4 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 93/219 (42.47%), Postives = 127/219 (57.99%), Query Frame = 3
Query:  114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L P LSE +L+A++  GF   TPVQA+TIPL  ++KDV V+A TGSGKTLAF++P+VE L R  S  K H I  ++ISPTREL++QIY+V    +                               STL  V  +LL G      D+    ++  N+L+ TPGRL +++          + E+LVLDEADRLLD+GF++ +  I+ RLPK RRTGLFS+
Sbjct:   24 LTPPLSEWILDAISAMGFSRMTPVQASTIPLFMAHKDVVVEAVTGSGKTLAFLIPVVERLLRLESPIKKHHIGAILISPTRELATQIYNVLLSLLAFHGPSAARLQRTENNSGEVDESNPASSYPPSTLKIVPQLLLGGTTTPTQDLSAFLKQSPNVLVSTPGRLLELLSSPHAHCSQSSFEVLVLDEADRLLDLGFKEDLQKILQRLPKQRRTGLFSA 242          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASPTN (ATP-dependent rRNA helicase spb4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=spb4 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.006e-37
Identity = 97/229 (42.36%), Postives = 129/229 (56.33%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M   P    +   +  + P+LSE VL+A+A  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F+VP+VE L R     K H I  +IISPTREL+SQI+ V    +                         STL  V  +LL G      D+    +   N+LI TPGRL +++    V     + E+LVLDEADRLLD+GF++ +  I+ RLPK RRTGLFS+
Sbjct:    1 MAPKPPAGTSSRAWEAVSPSLSEWVLDAVASWGFSKMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLVPVVEKLLRLEEPIKKHHIGAIIISPTRELASQIHQVLLSLLAFHPPSAAAIKPPGEDDAPREKFSASTLKVVPQLLLGGSTTPAEDLSYFLKHSPNVLISTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSA 229          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SPB4_ASPOR7.441e-4143.23ATP-dependent rRNA helicase spb4 OS=Aspergillus or... [more]
SPB4_ASPCL1.833e-3942.79ATP-dependent rRNA helicase spb4 OS=Aspergillus cl... [more]
SPB4_NEOFI4.083e-3942.36ATP-dependent rRNA helicase spb4 OS=Neosartorya fi... [more]
DDX55_DROME6.965e-3944.23Probable ATP-dependent RNA helicase DDX55 homolog ... [more]
SPB4_ASPFU1.188e-3841.92ATP-dependent rRNA helicase spb4 OS=Aspergillus fu... [more]
SPB4_ASPNC1.552e-3841.74ATP-dependent rRNA helicase spb4 OS=Aspergillus ni... [more]
SPB4_SCLS12.647e-3844.29ATP-dependent rRNA helicase spb4 OS=Sclerotinia sc... [more]
SPB4_BOTFB4.514e-3843.81ATP-dependent rRNA helicase spb4 OS=Botryotinia fu... [more]
SPB4_AJECN7.700e-3842.47ATP-dependent rRNA helicase SPB4 OS=Ajellomyces ca... [more]
SPB4_ASPTN1.006e-3742.36ATP-dependent rRNA helicase spb4 OS=Aspergillus te... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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