FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASHGO (ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii GN=SPB4 PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.348e-33
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  147 ALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR---ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGG--VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            A+   G+E  TPVQA+TIPL    KDV V++ TGSGKT+AFV+P++E + +    SS  K      +IISPTREL+SQI  V + F++  PD    +KS LL+G     V+ DV    E    +L+GTPGRL D + +M  +   +    +LDEAD+LLDM F+K +  I+  LPK RRTGLFS+
Sbjct:   21 AVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDDANSSKLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILVGTPGRLLDFL-KMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQRRTGLFSA 204          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_LODEL (ATP-dependent rRNA helicase SPB4 OS=Lodderomyces elongisporus GN=SPB4 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 87/221 (39.37%), Postives = 128/221 (57.92%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-----ILRRASSARKPHQI-----MGMIISPTRELSSQIYHVAQPFISTLPD-------VKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M++N    L E    DL+P L +    A+    +   TPVQA+TIPLL   KDV V+A TGSGKTLAF +P+++     + +      KP  +     + ++++PTREL+ QI  V    +  LP+       +K+ LLVG +  V+ D+   +E    +LI TPGRL D M  + ++   +LEI++LDEAD+LLDM F+  +  I+  LPK RRTGLFS+
Sbjct:    1 MQTNKGSLLWENLRVDLEPWLKD----AIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLDFMS-LQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLPKQRRTGLFSA 216          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB41_CANAL (ATP-dependent rRNA helicase SPB41 OS=Candida albicans GN=SPB41 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 84/214 (39.25%), Postives = 129/214 (60.28%), Query Frame = 3
Query:   84 KALTET-RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-----ILRRASSARKPHQI-----MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-----LLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            K+ TE+  + +L+  L   + EA++  G+   TPVQA+TIPLL   KDV V+A TGSGKTL+FV+P+++     + +  S    P  +     + +++SPTREL++QI  V    +  LP+ K       LLVG +  V+ D+ +       +LIGTPGR+ + +     +   +LEI++LDEAD+LLD  F+K +  I+ +LPK RRTGLFS+
Sbjct:    2 KSNTESLAWENLRYDLHSWIKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSA 215          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFA (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa GN=rhlB PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 89/204 (43.63%), Postives = 127/204 (62.25%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT   FS  DL PAL    L  L  AGF  CTP+QA T+P+  + +D+A  A TG+GKTLAF+V +V  L  R     R P     +I++PTREL+ QIY+ A  F   L  ++  L+ GGV+     +++  +GA+++I TPGRL D +++ +V+  R  EI VLDEADR+ D+GF K I +I+ RLP+   R+T LFS+
Sbjct:    3 DKPLTNLNFSSLDLHPAL----LTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNL-GLRFALIYGGVDYDKQ-REMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_YARLI (ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica GN=HAS1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 81/187 (43.32%), Postives = 123/187 (65.78%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            LSE  +++L + GFE  TPVQ  TIP L + +DV   A TGSGKTLAF++P +E+LR+     KP    G+I+ SPTREL+ QIY VA+  ++       ++ +GG   + + +K+ + G NLL+ TPGRL D ++      F+NL+ L++DEADR+L++GF++++  II  LPK R++ LFS+  T
Sbjct:  138 LSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKF--KPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIV-IGGNNRRQEEEKLNK-GVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKERQSMLFSATQT 320          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_CANGA (ATP-dependent rRNA helicase SPB4 OS=Candida glabrata GN=SPB4 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 84/199 (42.21%), Postives = 125/199 (62.81%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA---SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            ++DL   L   + +A+  +GF+  TPVQA+TIP+    KDV V++ TGSGKT+AFV+P++E +      +S  K      +I++PTRELS QI +V   F+   P+    ++S L+VG  E  V+ DV  + +E   +LIGTPGR+ D ++   V    +  ++VLDEADRLLD+ F K +  I++ LPK RRTGLFS+
Sbjct:    7 WADLDYELQPWIKKAINVSGFDSMTPVQASTIPMFAKNKDVVVESVTGSGKTIAFVIPILEKIISEGINNSKFKKGHFYSLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQILIGTPGRVLDFLQSPSV-KTSSCGMVVLDEADRLLDVSFFKDVEKILNVLPKQRRTGLFSA 204          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 88/204 (43.14%), Postives = 127/204 (62.25%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSA--RKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT   FS  DL PAL    L  L  AGF  CTP+QA T+P+  + +D+A  A TG+GKTLAF+V +V  L  +     R P     +I++PTREL+ QIY+ A  F   L  ++  L+ GGV+     +++  +GA+++I TPGRL D +++ +V+  R  EI VLDEADR+ D+GF K I +I+ RLP+   R+T LFS+
Sbjct:    3 DKPLTNLNFSSFDLHPAL----LTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNL-GLRFALIYGGVDYDRQ-REMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_PHANO (ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 86/196 (43.88%), Postives = 122/196 (62.24%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            TRF +L   LSE  +EA+   GFE  T +Q   IP L S KDV   A TGSGKTLAF++P +E+L  +S   KP    G+I+ SPTREL+ QI+ VA+  +        ++ +GG   +A+ +K+ + G NLLI TPGRL D +       F+NL+ L++DEADR+L++GF+ ++  II  LP  R+T LFS+  T
Sbjct:  131 TRFDELN--LSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEML--SSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIV-IGGANRRAEAEKLAK-GVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQTMLFSATQT 320          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVY (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus (strain YJ016) GN=rhlB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            +TE +F+DL   L+  V+E L + GFEFCTP+QA  +P+L S +D+A  A TG+GKTLAF+       +   A   R+P Q   +I++PTREL+ QIY+ A+P I++   +K+ L  GG      + K+ + G ++LIGT GR+ D  ++  V +  N++ +VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 ITEQKFADL--GLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIAS-TGIKAALAYGGESYDKQLAKL-QGGVDVLIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PHOPR (ATP-dependent RNA helicase rhlB OS=Photobacterium profundum GN=rhlB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 82/199 (41.21%), Postives = 126/199 (63.32%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+DL   L   VLE L   GF +CTP+QA  +P++ + +D+A  A TG+GKTLAF+       +L  AS  RK +Q   +I++PTREL+ QIY+ A P +++   +K+ L  GG E     +K+  EG ++LIGT GR+ D  ++  V+D  +++++VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEQKFADL--GLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLAS-TGLKAGLAYGG-EAYEKQQKVFAEGVDILIGTCGRIIDFYKQR-VIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSA 199          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SPB4_ASHGO3.348e-3345.95ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypi... [more]
SPB4_LODEL5.711e-3339.37ATP-dependent rRNA helicase SPB4 OS=Lodderomyces e... [more]
SPB41_CANAL5.711e-3339.25ATP-dependent rRNA helicase SPB41 OS=Candida albic... [more]
RHLB_XYLFA5.711e-3343.63ATP-dependent RNA helicase rhlB OS=Xylella fastidi... [more]
HAS1_YARLI5.711e-3343.32ATP-dependent RNA helicase HAS1 OS=Yarrowia lipoly... [more]
SPB4_CANGA7.458e-3342.21ATP-dependent rRNA helicase SPB4 OS=Candida glabra... [more]
RHLB_XYLFT7.458e-3343.14ATP-dependent RNA helicase rhlB OS=Xylella fastidi... [more]
HAS1_PHANO2.170e-3243.88ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria n... [more]
RHLB_VIBVY2.834e-3241.18ATP-dependent RNA helicase rhlB OS=Vibrio vulnific... [more]
RHLB_PHOPR3.701e-3241.21ATP-dependent RNA helicase rhlB OS=Photobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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