FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVU (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus GN=rhlB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            +TE +F+DL   L+  V+E L + GFEFCTP+QA  +P+L S +D+A  A TG+GKTLAF+       +   A   R+P Q   +I++PTREL+ QIY+ A+P I++   +K+ L  GG      + K+ + G ++LIGT GR+ D  ++  V +  N++ +VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 ITEQKFADL--GLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIAS-TGIKAALAYGGESYDKQLTKL-QGGVDVLIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_VANPO (ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SPB4 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32
Identity = 84/202 (41.58%), Postives = 123/202 (60.89%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGG--VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            + DL+  +   +  A+   GFE  TPVQAATIPL    KDV VD+ TGSGKT++FV+P+ E  +   A++ + K      +I+SPT+EL+ QI+ V + F+   P+    ++S LLVG     V+ DV    E    +LIGTPGR+ D + ++  +      +++LDEADRLLD+ F K +  I++ LPK RRTGLFS+  T
Sbjct:    7 WDDLEYPIQPWIRSAVDVMGFENMTPVQAATIPLFARNKDVVVDSVTGSGKTVSFVIPIFEKIVQEEANTTKMKKGHFHSLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQILIGTPGRILDFL-KIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQRRTGLFSATIT 207          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_PICST (ATP-dependent RNA helicase HAS1 OS=Pichia stipitis GN=HAS1 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 83/188 (44.15%), Postives = 123/188 (65.43%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683
            LSEP + A+++ GF+  T VQA TIP L + KDV   A TGSGKTLAF++P +E+L   S   KP    G+I+ SPTREL+ QI+ VA+  ++       ++ +GG   + + +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF++++  II  LPK  R++ LFS+  T
Sbjct:  110 LSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLY--SLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIV-IGGANRRQEAEKLAK-GVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPKEERQSMLFSATQT 293          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 81/199 (40.70%), Postives = 124/199 (62.31%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA--SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+DL   L   V+E L + GF++CTP+QA  +P+L + +D+A  A TG+GKTLAF+      L +      RKP+Q   +I++PTREL+ QIY+ A   +++   +K+ L  GG      + KI EEGA++LIGT GR+ D   +  V +  +++ +VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEQKFADLD--LLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVAS-TGIKAALAYGGESYDKQLGKI-EEGADILIGTTGRIIDFY-KQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH31_ARATH (DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 79/200 (39.50%), Postives = 122/200 (61.00%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA---SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD--VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            LT+TRF      LS   L+A+ +AG+E  T VQ AT+P++   KDV   A TG+GKT+AF++P +E++ ++   S   K   I+ ++I PTREL++Q    A   +   P +   +++GG  +  + K+++     +L+ TPGRL D +E         + +++LVLDEAD LLDMGF+K I  IIS +PK R+T LFS+
Sbjct:  245 LTKTRFDHYP--LSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSA 442          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_DEBHA (ATP-dependent rRNA helicase SPB4 OS=Debaryomyces hansenii GN=SPB4 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 84/206 (40.78%), Postives = 123/206 (59.71%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL-----------RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +S LK  L   + EA+   G+   TPVQA+TIPL    KDV V+A TGSGKTLAFV+P+++ L                 +K H ++ +I+SPTREL+ QI  V    +  +P+    +K+ LLVG +  V+ D+        ++LI TPGRL D +   + +   ++EI VLDEAD+LLD+ F++ +  I+ +LPK RRTGLFS+
Sbjct:   10 WSVLKCDLHPWIKEAIKSLGYPTMTPVQASTIPLFSGNKDVVVEAVTGSGKTLAFVIPVLQKLSNRLYNIDEEGENPEPVKKGH-MLSIILSPTRELAKQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILIATPGRLLDFLS-SNYVKTNSVEIAVLDEADKLLDISFERDVIKILKQLPKQRRTGLFSA 213          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_YEAST (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae GN=SPB4 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 3
Query:  162 GFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            GFE  TPVQA+TIP+L   KDV VD+ TGSGKT AFV+P++E  +   A++++ K      +II+PTRELS QI  V   F+   P     +K  LLVG  E  V+ DV         +LIGTPGR+ D ++ M  +      ++V+DEADRLLDM F K    I+  LPK RRTGLFS+
Sbjct:   26 GFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_YEAS7 (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae (strain YJM789) GN=SPB4 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 3
Query:  162 GFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            GFE  TPVQA+TIP+L   KDV VD+ TGSGKT AFV+P++E  +   A++++ K      +II+PTRELS QI  V   F+   P     +K  LLVG  E  V+ DV         +LIGTPGR+ D ++ M  +      ++V+DEADRLLDM F K    I+  LPK RRTGLFS+
Sbjct:   26 GFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_SCHPO (ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces pombe GN=spb4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 76/184 (41.30%), Postives = 117/184 (63.59%), Query Frame = 3
Query:  147 ALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD--------VKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            A+A  GF+  TPVQA  IPL    KD+ V+A TGSGKTLA+++P  + + R  +      +  +I++PTREL++QI++V +  ++  PD        V  + + G   +  D+    E+  +++IGTPGRL +++     +  ++LEIL+LDEAD L+DMGFQ+ +  IIS+LPK RRTGLFS+
Sbjct:   15 AVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETG--LGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSA 193          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT+  FS  DL PAL    +  L  AGF  CTP+QA T+P+     DVA  A TG+GKTLAF+V ++   ++R A + RKP     +I++PTREL+ QI+  A  F + L  ++  L+ GGV+     +++ ++G +++I TPGRL D +++  V+     EI VLDEADR+ D+GF K I +++ R+P+   R+T LFS+
Sbjct:    3 DKPLTDVTFSSFDLHPAL----IAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_VIBVU4.834e-3241.18ATP-dependent RNA helicase rhlB OS=Vibrio vulnific... [more]
SPB4_VANPO6.314e-3241.58ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozym... [more]
HAS1_PICST8.246e-3244.15ATP-dependent RNA helicase HAS1 OS=Pichia stipitis... [more]
RHLB_VIBSL1.077e-3140.70ATP-dependent RNA helicase rhlB OS=Vibrio splendid... [more]
RH31_ARATH1.077e-3139.50DEAD-box ATP-dependent RNA helicase 31 OS=Arabidop... [more]
SPB4_DEBHA1.407e-3140.78ATP-dependent rRNA helicase SPB4 OS=Debaryomyces h... [more]
SPB4_YEAST2.399e-3146.67ATP-dependent rRNA helicase SPB4 OS=Saccharomyces ... [more]
SPB4_YEAS72.399e-3146.67ATP-dependent rRNA helicase SPB4 OS=Saccharomyces ... [more]
SPB4_SCHPO2.399e-3141.30ATP-dependent rRNA helicase spb4 OS=Schizosaccharo... [more]
RHLB_XANC52.399e-3141.18ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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