FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  177 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 668
            T +Q A+I  +    D  V A TGSGKTL++++P+V+ L      R       +II+PTRELSSQIY   Q  +     +   +++GG    A+  +I + G N+L+ TPGRL D ++        N++  +LDEAD+LLD+GF+K ++ II+ L   +RT  F
Sbjct:  232 THIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYC-VIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRK-GINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKF 393          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP3_ASPNC (ATP-dependent RNA helicase dbp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 67/167 (40.12%), Postives = 103/167 (61.68%), Query Frame = 3
Query:  177 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSS 674
            T +Q+AT P L S +DV   A TGSGKTL F +P ++ L+ ++   KP++   ++ISPTREL+ QI+     F + L D+K   + GG  VK + ++   + A +++ TPGRL D+     V D   ++ LVLDEADR+LD GF++ I  II  +P   R+T +F++
Sbjct:  102 TAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYKPTAVMISPTRELAMQIHDQISKF-AELVDIKVACIFGG--VKKEEQREALKTAAIVVATPGRLKDLQNDGSV-DLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTA 264          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 66/181 (36.46%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQI----------MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 632
            P L   +LE +  A F   TPVQ  ++P++ + +D+   A TGSGKT  F+ P++    +   + +P               +I++PTREL++QI+  A+ F +    VK+ ++ GG  +   +++IE  G +LL+ TPGRL D++ER  +    N++ LVLDEADR+LDMGF+ QI +I+
Sbjct:  147 PPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKF-TYRSWVKACVVYGGSPIGNQLREIER-GCDLLVATPGRLNDLLERGKI-SLANVKYLVLDEADRMLDMGFEPQIRHIV 324          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 66/181 (36.46%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQI----------MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 632
            P L   +LE +  A F   TPVQ  ++P++ + +D+   A TGSGKT  F+ P++    +   + +P               +I++PTREL++QI+  A+ F +    VK+ ++ GG  +   +++IE  G +LL+ TPGRL D++ER  +    N++ LVLDEADR+LDMGF+ QI +I+
Sbjct:  147 PPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKF-TYRSWVKACVVYGGSPIGNQLREIER-GCDLLVATPGRLNDLLERGKI-SLANVKYLVLDEADRMLDMGFEPQIRHIV 324          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 61/183 (33.33%), Postives = 108/183 (59.02%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L   +L  + E GFE  +P+Q  +IP+  + +D+   A  G+GKT AF +P++E + + ++      I  +II PTREL+ Q   V +     L  ++ ++  GG  +K D+ ++ +   +LL+GTPGR+ D+ ++  V   ++  +LV+DEAD+LL   FQ  + ++IS LP+ R+  +FS+
Sbjct:  138 LKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNV-----IQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLKDDIMRLYQP-VHLLVGTPGRILDLTKK-GVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 65/177 (36.72%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRAS-SARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL 641
            L   LS+ + E +   GFE  T VQA  IP++ S +DV V+A TG+GKT+A++ PL+  L+  S    + H    ++I PTREL  Q+Y   +  +     +    ++GG E KA  K    +G ++LI TPGRL D ++       +NL  ++ DEAD +L++G+ K+I  II  L
Sbjct:   36 LDTKLSDQLKERM---GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG-EKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLL 208          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 74/219 (33.79%), Postives = 120/219 (54.79%), Query Frame = 3
Query:   60 VRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQIMG---------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP----KLRRTGLFSS 674
            + +E++ +       F+D+   L + +L  +  A +   TPVQ + +P++   +D+   A TGSGKT AF+ P++  IL   +    P    G         ++++PTREL+ QI+  A  F    P V SV++ GG EV   + ++ + G ++L+ T GRL D++ R  V     ++ LVLDEADR+LDMGF+ QI  IIS       + R+T +FS+
Sbjct:  234 ISIETSEHICAPLNSFADVD--LGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSP-VSSVVIYGGAEVFHQINEL-DRGCDILVATTGRLVDLLMRGRV-SLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSA 447          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP7_PHANO (ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria nodorum GN=DBP7 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 3
Query:  186 QAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQ----------IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTG 662
            +AA   L+    D  + A TGSGKTLA+++P+V+ L   S+  K H+          +  +I++PTRELS QI  V +  +     + +  ++GG + K++  ++ + G N+L+ TPGRL D +E  + LD  N+  LVLDE DRL+++GF+++I  I+  L  LR  G
Sbjct:  214 KAAITQLVKDDSDAFIQAETGSGKTLAYLLPIVQRLMELSANMKKHKDDDAVQRNSGLFAIIMAPTRELSKQIALVLEKLLGCAHWLVATTVIGGEKKKSEKARLRK-GINILVATPGRLADHLEHTEALDVSNVRWLVLDEGDRLMELGFEQEIQKIVGAL-NLRMRG 380          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP3_ASPOR (ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae GN=dbp3 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 68/167 (40.72%), Postives = 102/167 (61.08%), Query Frame = 3
Query:  159 AGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRR 656
            + F+  T +Q+AT PLL + +DV   A TGSGKTLAF +P L +I   A + +KP++ + +IISPTREL+ QIY     F  ++  V+   + GGV  +   + ++  G  +++ TPGRL D+     V D   ++ LVLDEADR+LD GF++ I  II  +P  +R
Sbjct:   98 SSFKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSV-GVRVACVFGGVRKEEQREALKTAG--VVVATPGRLKDLQNDGSV-DLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKR 260          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 70/203 (34.48%), Postives = 116/203 (57.14%), Query Frame = 3
Query:   84 KALTETRFSDLKPALSEPVLEALAEA--GFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEILRR---ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            K + E +++ LK      + E + +    FE  +P+Q+ T P L   +D+   A TGSGKTLAF +P ++ +L++        K      +++SPTREL+ QI  V +        +KS+ + GG      +  I   G +++IGTPGRL D++E  +VL   ++  +VLDEADR+LDMGF++ + +I+S   K+R+  +FS+
Sbjct:  105 KGVEEAKYAALKTFAESNLPENVLDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC-GLKSICVYGGSSKGPQISAIRS-GVDIVIGTPGRLRDLIES-NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSA 304          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX31_DICDI2.659e-2237.80Probable ATP-dependent RNA helicase ddx31 OS=Dicty... [more]
DBP3_ASPNC2.659e-2240.12ATP-dependent RNA helicase dbp3 OS=Aspergillus nig... [more]
DED1_YEAST3.473e-2236.46ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_YEAS73.473e-2236.46ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
RH8_ARATH4.535e-2233.33DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH17_ARATH4.535e-2236.72DEAD-box ATP-dependent RNA helicase 17 OS=Arabidop... [more]
DDX3_DICDI4.535e-2233.79Probable ATP-dependent RNA helicase ddx3 OS=Dictyo... [more]
DBP7_PHANO4.535e-2236.09ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria n... [more]
DBP3_ASPOR4.535e-2240.72ATP-dependent RNA helicase dbp3 OS=Aspergillus ory... [more]
RH5_ARATH5.923e-2234.48DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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