FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT+  FS  DL PAL    +  L  AGF  CTP+QA T+P+     DVA  A TG+GKTLAF+V ++   ++R A + RKP     +I++PTREL+ QI+  A  F + L  ++  L+ GGV+     +++ ++G +++I TPGRL D +++  V+     EI VLDEADR+ D+GF K I +++ R+P+   R+T LFS+
Sbjct:    3 DKPLTDVTFSSFDLHPAL----IAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 89/204 (43.63%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   78 PNKALTETR-FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            P  A +E + FS+L   LSE  ++A+ E GF   T +Q   IP L + KDV   A TGSGKTLAF++P VE+LR  S   KP    G+I +SPTREL+ QI+ VA+  +        + ++GG   +A+ +K+  +G NLLI TPGRL D ++    + F+NL  LV+DEADR+L++GF+ ++  II  LPK R++ LFS+  T
Sbjct:  104 PTTAESEAQAFSELN--LSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLR--SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGI-VIGGANRRAEAEKL-SKGVNLLIATPGRLLDHLQNTPFV-FKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQSMLFSATQT 300          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANCP (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris GN=rhlB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT+  FS  DL PAL    +  L  AGF  CTP+QA T+P+     DVA  A TG+GKTLAF+V ++   ++R A + RKP     +I++PTREL+ QI+  A  F + L  ++  L+ GGV+     +++ ++G +++I TPGRL D +++  V+     EI VLDEADR+ D+GF K I +++ R+P+   R+T LFS+
Sbjct:    3 DKPLTDLTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANCB (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain B100) GN=rhlB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT+  FS  DL PAL    +  L  AGF  CTP+QA T+P+     DVA  A TG+GKTLAF+V ++   ++R A + RKP     +I++PTREL+ QI+  A  F + L  ++  L+ GGV+     +++ ++G +++I TPGRL D +++  V+     EI VLDEADR+ D+GF K I +++ R+P+   R+T LFS+
Sbjct:    3 DKPLTDLTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT+  FS  DL PAL    +  L  AGF  CTP+QA T+P+     DVA  A TG+GKTLAF+V ++   ++R A + RKP     +I++PTREL+ QI+  A  F + L  ++  L+ GGV+     +++ ++G +++I TPGRL D +++  V+     EI VLDEADR+ D+GF K I +++ R+P+   R+T LFS+
Sbjct:    3 DKPLTDLTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_EMENI (ATP-dependent RNA helicase has1 OS=Emericella nidulans GN=has1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 91/217 (41.94%), Postives = 134/217 (61.75%), Query Frame = 3
Query:   42 PRLP*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            P LP +V   S P       +F++L   LSE  L+ + E GFE  T +Q  TIP L + +DV   A TGSGKTLAF++P +E+L   S+ R KP    G+I+ SPTREL+ QI+ VA+  ++       ++ +GG   +A+ +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  II  LP + R+T LFS+  T
Sbjct:  110 PDLP-SVDAVSLPQPDGGPKKFTEL--GLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML---SALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIV-IGGANRRAEAEKLTK-GVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTMLFSATQT 318          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_COCIM (ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 90/217 (41.47%), Postives = 135/217 (62.21%), Query Frame = 3
Query:   42 PRLP*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            P LP ++   S P       +F++L   LSE  L+A+ E GFE  T +Q   IP L + +DV   A TGSGKTL+F++P VE+L   S+ R KP    G+I+ SPTREL+ QI+ VA+  ++       ++ +GG   +A+ +K+ + G NLLI TPGRL D ++  D   F+NL+ LV+DEADR+L++GF+ ++  I+  LP + R+T LFS+  T
Sbjct:  106 PELP-SLNALSLPQTENEPQKFTELN--LSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIV-IGGANRRAEAEKLTK-GVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTMLFSATQT 314          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBHB (ATP-dependent RNA helicase rhlB OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rhlB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 80/199 (40.20%), Postives = 122/199 (61.31%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA--SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+DL   L   V E L + GFE+CTP+QA  +P+L + +D+A  A TG+GKTLAF+      L        RKP Q   +I++PTREL+ QI++ A P I++   +K+ L  GG      + K+ ++G ++LIGT GR+ D  ++  V +  N++ +VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEQKFADL--GLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIAS-TGLKAALAYGGESYDKQLAKL-QDGVDILIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANOR (ATP-dependent RNA helicase rhlB OS=Xanthomonas oryzae pv. oryzae GN=rhlB PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 85/204 (41.67%), Postives = 127/204 (62.25%), Query Frame = 3
Query:   81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674
            +K LT+  FS  DL PAL    +  L  AGF  CTP+QA T+P+     DVA  A TG+GKTLAF+V ++  L  R A + RKP     +I++PTREL+ QI+  A  F + L  ++  L+ GGV+     +++ ++G +++I TPGRL D +++  V+     EI VLDEADR+ D+GF K I +++ R+P+   R+T LFS+
Sbjct:    3 DKPLTDVTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBPA (ATP-dependent RNA helicase rhlB OS=Vibrio parahaemolyticus GN=rhlB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 79/199 (39.70%), Postives = 123/199 (61.81%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA--SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+DL   L   V E L + GFE+CTP+QA  +P+L + +D+A  A TG+GKTLAF+      L        R+P Q   +I++PTREL+ QI++ A+P I++   +K+ L  GG      + K+ ++G ++LIGT GR+ D  ++  V +  N++ +VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEQKFADL--GLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIAS-TGLKAALAYGGESYDKQLAKL-QDGVDILIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSA 199          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_XANAC2.399e-3141.18ATP-dependent RNA helicase rhlB OS=Xanthomonas axo... [more]
HAS1_MAGGR3.133e-3143.63ATP-dependent RNA helicase HAS1 OS=Magnaporthe gri... [more]
RHLB_XANCP4.092e-3141.18ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANCB4.092e-3141.18ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANC84.092e-3141.18ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
HAS1_EMENI4.092e-3141.94ATP-dependent RNA helicase has1 OS=Emericella nidu... [more]
HAS1_COCIM4.092e-3141.47ATP-dependent RNA helicase HAS1 OS=Coccidioides im... [more]
RHLB_VIBHB5.345e-3140.20ATP-dependent RNA helicase rhlB OS=Vibrio harveyi ... [more]
RHLB_XANOR6.981e-3141.67ATP-dependent RNA helicase rhlB OS=Xanthomonas ory... [more]
RHLB_VIBPA6.981e-3139.70ATP-dependent RNA helicase rhlB OS=Vibrio parahaem... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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