FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31 Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT+ FS DL PAL + L AGF CTP+QA T+P+ DVA A TG+GKTLAF+V ++ ++R A + RKP +I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFS+ Sbjct: 3 DKPLTDVTFSSFDLHPAL----IAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31 Identity = 89/204 (43.63%), Postives = 128/204 (62.75%), Query Frame = 3 Query: 78 PNKALTETR-FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 P A +E + FS+L LSE ++A+ E GF T +Q IP L + KDV A TGSGKTLAF++P VE+LR S KP G+I +SPTREL+ QI+ VA+ + + ++GG +A+ +K+ +G NLLI TPGRL D ++ + F+NL LV+DEADR+L++GF+ ++ II LPK R++ LFS+ T Sbjct: 104 PTTAESEAQAFSELN--LSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLR--SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGI-VIGGANRRAEAEKL-SKGVNLLIATPGRLLDHLQNTPFV-FKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQSMLFSATQT 300
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANCP (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris GN=rhlB PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31 Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT+ FS DL PAL + L AGF CTP+QA T+P+ DVA A TG+GKTLAF+V ++ ++R A + RKP +I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFS+ Sbjct: 3 DKPLTDLTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANCB (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain B100) GN=rhlB PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31 Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT+ FS DL PAL + L AGF CTP+QA T+P+ DVA A TG+GKTLAF+V ++ ++R A + RKP +I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFS+ Sbjct: 3 DKPLTDLTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31 Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT+ FS DL PAL + L AGF CTP+QA T+P+ DVA A TG+GKTLAF+V ++ ++R A + RKP +I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFS+ Sbjct: 3 DKPLTDLTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_EMENI (ATP-dependent RNA helicase has1 OS=Emericella nidulans GN=has1 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31 Identity = 91/217 (41.94%), Postives = 134/217 (61.75%), Query Frame = 3 Query: 42 PRLP*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683 P LP +V S P +F++L LSE L+ + E GFE T +Q TIP L + +DV A TGSGKTLAF++P +E+L S+ R KP G+I+ SPTREL+ QI+ VA+ ++ ++ +GG +A+ +K+ + G NLLI TPGRL D ++ F+NL+ LV+DEADR+L++GF+ ++ II LP + R+T LFS+ T Sbjct: 110 PDLP-SVDAVSLPQPDGGPKKFTEL--GLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML---SALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIV-IGGANRRAEAEKLTK-GVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTMLFSATQT 318
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_COCIM (ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis GN=HAS1 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31 Identity = 90/217 (41.47%), Postives = 135/217 (62.21%), Query Frame = 3 Query: 42 PRLP*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683 P LP ++ S P +F++L LSE L+A+ E GFE T +Q IP L + +DV A TGSGKTL+F++P VE+L S+ R KP G+I+ SPTREL+ QI+ VA+ ++ ++ +GG +A+ +K+ + G NLLI TPGRL D ++ D F+NL+ LV+DEADR+L++GF+ ++ I+ LP + R+T LFS+ T Sbjct: 106 PELP-SLNALSLPQTENEPQKFTELN--LSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIV-IGGANRRAEAEKLTK-GVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTMLFSATQT 314
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBHB (ATP-dependent RNA helicase rhlB OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rhlB PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31 Identity = 80/199 (40.20%), Postives = 122/199 (61.31%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA--SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674 +TE +F+DL L V E L + GFE+CTP+QA +P+L + +D+A A TG+GKTLAF+ L RKP Q +I++PTREL+ QI++ A P I++ +K+ L GG + K+ ++G ++LIGT GR+ D ++ V + N++ +VLDEADR+ D+GF K I ++ R+ PK R LFS+ Sbjct: 6 ITEQKFADL--GLKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIAS-TGLKAALAYGGESYDKQLAKL-QDGVDILIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSA 199
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANOR (ATP-dependent RNA helicase rhlB OS=Xanthomonas oryzae pv. oryzae GN=rhlB PE=3 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31 Identity = 85/204 (41.67%), Postives = 127/204 (62.25%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT+ FS DL PAL + L AGF CTP+QA T+P+ DVA A TG+GKTLAF+V ++ L R A + RKP +I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFS+ Sbjct: 3 DKPLTDVTFSSFDLHPAL----VAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBPA (ATP-dependent RNA helicase rhlB OS=Vibrio parahaemolyticus GN=rhlB PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31 Identity = 79/199 (39.70%), Postives = 123/199 (61.81%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA--SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674 +TE +F+DL L V E L + GFE+CTP+QA +P+L + +D+A A TG+GKTLAF+ L R+P Q +I++PTREL+ QI++ A+P I++ +K+ L GG + K+ ++G ++LIGT GR+ D ++ V + N++ +VLDEADR+ D+GF K I ++ R+ PK R LFS+ Sbjct: 6 ITEQKFADL--GLQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIAS-TGLKAALAYGGESYDKQLAKL-QDGVDILIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNMLFSA 199 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |