FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH26_ARATH (DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana GN=RH26 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 77/200 (38.50%), Postives = 124/200 (62.00%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQ--IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L++TRF      LS   L+A+ +AGFE  T VQ AT+P++   KDV   A TG+GKT+AF++P +E +++   ++R   Q  I+ +++ PTREL+SQ    A   +   P +   +++GG ++  + ++++     +L+ TPGRL D +E       R   +++LVLDEAD LLDMGF++ I  II+ +PK R+T LFS+
Sbjct:  379 LSKTRFDQFP--LSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSA 576          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX18_DICDI (Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum GN=ddx18 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 79/194 (40.72%), Postives = 125/194 (64.43%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            FS+L   + E   +++ E GF+  TP+QA +I  L   KD+   A TGSGKTLAF++P +E+L +++   KP    G+II SPTREL+ QIY VA+  +        ++ +GG   K + +++E+ G NLL+ TPGRL D ++       +NL+ L++DEADR+L++GF++++  II ++PK R+T LFS+  T
Sbjct:  121 FSNLP--IEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNF--KPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIV-IGGASKKPEEERLEK-GVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQT 308          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_GIBZE (ATP-dependent RNA helicase DBP4 OS=Gibberella zeae GN=DBP4 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 81/204 (39.71%), Postives = 123/204 (60.29%), Query Frame = 3
Query:   63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            R++    K+    +FS+L   LS P  E L  A F+  T VQA  +PL    KD+   A TGSGKTLAF++P++E L RA        +  +IISPTREL++QI+ V +  + T     + L++GG  +K + ++++    N+L+ TPGR+    ++    D  NL+ILVLDEADR++DMGFQ  +  +I  LP+ R+T +FS+
Sbjct:   39 RVDELDLKSDATKKFSELP--LSVPTAEGLEIAHFQTLTDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDG-LGALIISPTRELAAQIFEVLRK-VGTKHSFSAGLVIGGKSLKEEAERLDR--MNILVCTPGRMLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEHLPRERQTLMFSA 236          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH25_ARATH (DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis thaliana GN=RH25 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 75/218 (34.40%), Postives = 129/218 (59.17%), Query Frame = 3
Query:   36 PNPRLP*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQ---IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            P    P   ++    +  L++TRF      LS   L+ + +AGF+  T VQ AT+PL+   KD+   A TG+GKT+AF++P +E + +A  A + ++   I+ +++ PTREL+ Q    A   +   P +   +++GG ++  + +++++    +L+ TPGRL D ++       R   +++LVLDEAD LLDMGF+++I  II+ +PK R+T LFS+
Sbjct:   59 PASTTPLVTQIAKTSDSYLSKTRFDQFP--LSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSA 274          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 81/205 (39.51%), Postives = 122/205 (59.51%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E+NP+K  T + F  +  +LS P++  LA  GF   TP+QA +IP+    KDV   A TGSGKT AF++P++E  R     +K      +++ PTREL+ Q + VA   ++   D+K  L VGG+ +KA   +++    +++I TPGR  D M          +EILVLDEADR+L+ GF  +++ I++ LPK R+T LFS+  T
Sbjct:  246 ENNPDKKATASSFQTM--SLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILE--RLLYRPKKIPTTRVVVLLPTRELAIQCHAVATK-LAAFTDIKFTLAVGGLSLKAQELELKLR-PDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 444          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_CRYNE (ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans GN=HAS1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 91/207 (43.96%), Postives = 125/207 (60.39%), Query Frame = 3
Query:   72 SNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            S P        FS L   LS P   A+   GFE  T VQA TIP L + KDV   A TGSGKT+AF++P VE+L   S+ R KP    G+II SPTREL+ QI+ VA+  +        VL+ GG   KA+  K+ + G NL++ TPGRL D ++      F+NL+ LV+DEADR+L++GF++++  II  LP + R++ LFS+  T
Sbjct:  120 SAPGTDYERVPFSTLN--LSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELL---STLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLM-GGANRKAEADKLVK-GVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQSMLFSATQT 319          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH31_ORYSJ (DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa subsp. japonica GN=Os06g0526600 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 76/200 (38.00%), Postives = 118/200 (59.00%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR---ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L++TRF +   +LS   L+ +  AG+E  T VQ AT+P++   KDV   A TG+GKT+AF++P +E++ +       +K   I  +++ PTREL+ Q    A   +   P +   L++GG  +  + K++      +L+ TPGRL D ME       R   +++L+LDEADRLLDMGF+  I  I++ LPK R+T LFS+
Sbjct:   76 LSQTRFDEC--SLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSA 273          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_PICGU (ATP-dependent RNA helicase HAS1 OS=Pichia guilliermondii GN=HAS1 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 84/196 (42.86%), Postives = 122/196 (62.24%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683
            +F DL   LSEP + A+ + GFE  T VQ  TIP L + +DV   A TGSGKTLAF++P +E+L   S   KP    G+I+ SPTREL+ QI+ VA+  ++       ++ +GG   + +  K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  II  LP   R++ LFS+  T
Sbjct:  106 KFEDL--GLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLY--SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIV-IGGANRRQEADKLMK-GVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDERQSMLFSATQT 295          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_NEUCR (ATP-dependent RNA helicase has-1 OS=Neurospora crassa GN=has-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 85/204 (41.67%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSSYST 683
            P+ A   T FS+L   LS+  ++A+AE GF   T +Q   IP L + KDV   A TGSGKTLAF++P +E+L  +S   KP    G ++++PTREL+ QI+ VA+  +        V ++GG   +A+ +K+  +G NLLI TPGRL D ++    + F+N+  L++DEADR+L++GF+ ++  II  LPK  R+T LFS+  T
Sbjct:  100 PSIATNATDFSELN--LSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGV-VIGGANRRAEAEKL-GKGVNLLIATPGRLLDHLQNTPFV-FKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQTMLFSATQT 296          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_DEBHA (ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii GN=HAS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 85/207 (41.06%), Postives = 131/207 (63.29%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            ESN +  +T+  F +    LSEP L+A+ + GF   T VQA TIP L + +DV   A TGSGKTLAF++P +E+L   S   KP    G+++ SPTREL+ QI+ VA+  ++       ++ +GG   + + +K+ + G NLLI TPGRL D ++      F+N++ LV+DEADR+L++GF++++  II  LP + R++ LFS+  T
Sbjct:   95 ESNHDDIVTDN-FEEA--GLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLY--SLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIV-IGGANRRQEAEKLMK-GVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKILPNEDRQSMLFSATQT 294          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH26_ARATH6.981e-3138.50DEAD-box ATP-dependent RNA helicase 26 OS=Arabidop... [more]
DDX18_DICDI6.981e-3140.72Probable ATP-dependent RNA helicase ddx18 OS=Dicty... [more]
DBP4_GIBZE1.191e-3039.71ATP-dependent RNA helicase DBP4 OS=Gibberella zeae... [more]
RH25_ARATH1.555e-3034.40DEAD-box ATP-dependent RNA helicase 25 OS=Arabidop... [more]
DRS1_GIBZE1.555e-3039.51ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
HAS1_CRYNE2.031e-3043.96ATP-dependent RNA helicase HAS1 OS=Cryptococcus ne... [more]
RH31_ORYSJ2.653e-3038.00DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sa... [more]
HAS1_PICGU2.653e-3042.86ATP-dependent RNA helicase HAS1 OS=Pichia guillier... [more]
HAS1_NEUCR2.653e-3041.67ATP-dependent RNA helicase has-1 OS=Neurospora cra... [more]
HAS1_DEBHA2.653e-3041.06ATP-dependent RNA helicase HAS1 OS=Debaryomyces ha... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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