FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASPCL (ATP-dependent RNA helicase has1 OS=Aspergillus clavatus GN=has1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 84/197 (42.64%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F++L   LSE  L+A+ E GFE  T +Q  TIP L + +DV   A TGSGKTL+F++P VE+L   S+ R KP    G +++SPTREL+ QI+ VA+           ++ +GG   +A+ +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  I+  LP + R+T LFS+  T
Sbjct:  144 KFTEL--GLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIV-IGGANRRAEAEKLMK-GVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQT 333          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASPTN (ATP-dependent RNA helicase has1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=has1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 83/197 (42.13%), Postives = 124/197 (62.94%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F +L   LSEP ++A+ + GFE  T +Q  TIP   + +D+   A TGSGKTLAF++P VE+L   S+ R KP    G+II +PTREL+ QI+ VA+           ++ +GG   +A+ +K+ + G NLLI TPGRL D ++      ++N ++LVLDEADR LD+GF+ ++  I+  LP + R+T LFS+  T
Sbjct:   99 KFDELN--LSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEML---SALRFKPRNGTGVIIITPTRELALQIFGVAKELCEFHSQTYGIV-IGGANRRAEAEKLNK-GVNLLIATPGRLLDHLQNTQGFVYKNCKVLVLDEADRCLDVGFEAELRQIVKILPSEERQTLLFSATQT 288          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_YEAST (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae GN=DBP4 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 83/190 (43.68%), Postives = 118/190 (62.11%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            F DL   +S+P L+ L E+ F   T +QA +IP+     DV   A TGSGKTLAF+VP++E L R         +  +IISPTREL+ QIY V    I +     + L++GG +VK ++++I     N+LIGTPGR+   +++   L+  NL++LVLDEADR LDMGF+K +  I+S L   R+T LFS+
Sbjct:   43 FKDLP--ISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDG-LGALIISPTRELAMQIYEVLTK-IGSHTSFSAGLVIGGKDVKFELERISR--INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSA 226          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_YEAS7 (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP4 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 83/190 (43.68%), Postives = 118/190 (62.11%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            F DL   +S+P L+ L E+ F   T +QA +IP+     DV   A TGSGKTLAF+VP++E L R         +  +IISPTREL+ QIY V    I +     + L++GG +VK ++++I     N+LIGTPGR+   +++   L+  NL++LVLDEADR LDMGF+K +  I+S L   R+T LFS+
Sbjct:   43 FKDLP--ISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDG-LGALIISPTRELAMQIYEVLTK-IGSHTSFSAGLVIGGKDVKFELERISR--INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSA 226          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_DEBHA (ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii GN=DBP4 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 81/192 (42.19%), Postives = 117/192 (60.94%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            ++FSDL   +SE     L EA F   T +Q  TIP+    +DV   A TGSGKTLAF++P +E L R +   +   +  +IISPTREL+ QI+ V    I    +  + L+ GG +VK + +++ +   N+L+GTPGR+   +     ++  NL++LVLDEADR LDMGF+KQI  I+  LP  R+T LFS+
Sbjct:   46 SQFSDLP--ISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPTIESLIR-NKITEYDGLAALIISPTRELAVQIFEVLVK-IGKHNNFSAGLVTGGKDVKYEKERVSK--MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPPTRQTLLFSA 231          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_NEUCR (ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa GN=dbp-4 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 3
Query:   63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            R++    K+    +FSDL   L EP    L  + FE  T VQ A IPL    +D+   A TGSGKTLAF+VP++E L RA        +  +IISPTREL+ QI+ V +  I       + L++GG  +K + +++     N+L+ TPGR+   +++    D  NL++LVLDEADR++DMGFQ+ +  ++  LPK R+T LFS+
Sbjct:   45 RIDELDPKSTELNKFSDLP--LCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEKLYRARWTEYDG-LGALIISPTRELAVQIFEVLRK-IGRNHSFSAGLVIGGKSLKEEAERLGR--MNILVCTPGRMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLPKSRQTLLFSA 242          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_YEAST (ATP-dependent RNA helicase HAS1 OS=Saccharomyces cerevisiae GN=HAS1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 82/196 (41.84%), Postives = 125/196 (63.78%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F +LK  LS+P L+A+ + GF   T VQA TIP L + +DV   A TGSGKTLAF++P +E+L   S   KP    G+I I+PTREL+ QI+ VA+  +        + ++GG   + + +K+  +G N+LI TPGRL D ++      F+NL+ L++DEADR+L++GF+ ++  II  LP + R++ LFS+  T
Sbjct:   43 KFEELK--LSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGI-VIGGANRRQEAEKL-MKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQT 232          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_SCHPO (ATP-dependent RNA helicase has1 OS=Schizosaccharomyces pombe GN=has1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 84/196 (42.86%), Postives = 123/196 (62.76%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +FSDL+  LSE + +A+ E GFE  T +Q  +IP L + +DV   A TGSGKTLAF++P +E+L       KP    G+II SPTREL+ QI+ VA+  +        ++ +GG   +A+  K+ + G NLL+ TPGRL D ++      FRNL  LV+DEADR+L++GF+ ++  I+  LP + R+T LFS+  T
Sbjct:   90 KFSDLQ--LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKF--KPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIV-IGGANRRAEADKLVK-GVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQT 279          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASPFU (ATP-dependent RNA helicase has1 OS=Aspergillus fumigatus GN=has1 PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 84/197 (42.64%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F++L   LSE  L+A+ + GFE  T +Q  TIP L + +DV   A TGSGKTL+F++P VE+L   S+ R KP    G+I+ SPTREL+ QI+ VA+           ++ +GG   +A+ +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  I+  LP + R+T LFS+  T
Sbjct:  141 KFTEL--GLSEKTLKAINDMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIV-IGGANRRAEAEKLMK-GVNLLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQT 330          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 76/189 (40.21%), Postives = 114/189 (60.32%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG--MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683
            LS PVL AL+   F   TP+Q+ TIP+  + KD+   A TGSGKT AF++P +E L   +  R PH+     +I++PTREL+ Q Y V +  I+   D++  L VGG+ VK+   +++     ++I TPGRL D +         ++EILV+DEADR+L+ GF  +++ I+   PK  R+T LFS+  T
Sbjct:  340 LSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKS-IAKFTDIRFCLCVGGLSVKSQEAELKLR-PEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGARQTMLFSATMT 526          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HAS1_ASPCL2.653e-3042.64ATP-dependent RNA helicase has1 OS=Aspergillus cla... [more]
HAS1_ASPTN3.464e-3042.13ATP-dependent RNA helicase has1 OS=Aspergillus ter... [more]
DBP4_YEAST3.464e-3043.68ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
DBP4_YEAS73.464e-3043.68ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]
DBP4_DEBHA3.464e-3042.19ATP-dependent RNA helicase DBP4 OS=Debaryomyces ha... [more]
DBP4_NEUCR4.525e-3040.20ATP-dependent RNA helicase dbp-4 OS=Neurospora cra... [more]
HAS1_YEAST5.910e-3041.84ATP-dependent RNA helicase HAS1 OS=Saccharomyces c... [more]
HAS1_SCHPO5.910e-3042.86ATP-dependent RNA helicase has1 OS=Schizosaccharom... [more]
HAS1_ASPFU5.910e-3042.64ATP-dependent RNA helicase has1 OS=Aspergillus fum... [more]
DRS1_USTMA5.910e-3040.21ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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