FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_MANSM (ATP-dependent RNA helicase rhlB OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rhlB PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30 Identity = 80/197 (40.61%), Postives = 123/197 (62.44%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674 L++ RF+DL L+ VLEAL GFE+CTP+QA ++P+ + KDVA A TG+GKT+AF+ L K + +I++PTREL+ QI H A+ + T +K+ L GG +K I E GA+++IGT GR+ D + + +++ +++++VLDEADR+ D+GF K I Y++ + PK R T LFS+ Sbjct: 6 LSQQRFADLP--LNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHHL--LEHPVKTNHPRALIMAPTRELAVQIAHDAERMVKT-TGLKTALAYGGDGYDKQLKAI-EAGADIIIGTTGRIIDYV-KQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCPSPKQRLTLLFSA 195
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_IDILO (ATP-dependent RNA helicase rhlB OS=Idiomarina loihiensis GN=rhlB PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29 Identity = 73/188 (38.83%), Postives = 119/188 (63.30%), Query Frame = 3 Query: 84 KALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV-EILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644 K LTETRF+DL AL + +A++ AGFE+CTP+QA ++P+ S +DVA A TG+GKTLAF++ +++ SS + +I++PTREL+ QI H A I +K ++ GG + +++ + ++L+GT GRL D + D+ +++E++VLDEADR+ D+GF I Y++ ++P Sbjct: 4 KHLTETRFADL--ALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHC-GLKMGVIYGGEGYEGQKEQLAAQ-PDILVGTTGRLIDFY-KQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMP 186
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASPNC (ATP-dependent RNA helicase has1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=has1 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29 Identity = 81/197 (41.12%), Postives = 127/197 (64.47%), Query Frame = 3 Query: 102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683 +F++L LSE ++ + + GFE T +Q TIP L + +DV A TGSGKTL+F++P VE+L S+ R KP G +++SPTREL+ QI+ VA+ ++ ++ +GG +A+ +K+ + G NLLI TPGRL D ++ F+NL+ LV+DEADR+L++GF+ ++ I+ LP + R+T LFS+ T Sbjct: 126 KFTELN--LSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYGIV-IGGANRRAEAEKLTK-GVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQT 315
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_LODEL (ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus GN=DBP4 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29 Identity = 78/193 (40.41%), Postives = 118/193 (61.14%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 FSDL +++ L L E F T +Q +IP+ +D+ A TGSGKTLAF++P++EIL R + + + +I+SPTREL+ QI+ V I + L+ GG +V+ + ++I N+L+GTPGR+ + ++ NL++LVLDEADR LDMGF+KQI I++ LP+ R+T LFS+ T Sbjct: 50 FSDLP--ITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEILLR-NDITEYDGLAALIVSPTRELAVQIFEVLAK-IGKYNSFSAGLVTGGKDVQYEKERISR--MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTLLFSATHT 236
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_LODEL (ATP-dependent RNA helicase HAS1 OS=Lodderomyces elongisporus GN=HAS1 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29 Identity = 83/195 (42.56%), Postives = 122/195 (62.56%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQ-IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683 +S K SEP ++A+ E GF+ T VQA TIP L + +DV A TGSGKTLAF++P VE+L S KP +II+PTREL+ QI+ VA+ + + ++GG + + + K+ +G NLL+ TPGRL D ++ F NL+ LV+DEADR+L++GF++++ II LP + R+T LFS+ T Sbjct: 93 YSFEKADFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELL--YSLKIKPRNGTAVIIITPTRELALQIFGVARQLMEYHSQTCGI-VIGGADRRQEATKL-AKGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILPNEDRQTMLFSATQT 283
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX10_MOUSE (Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus GN=Ddx10 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29 Identity = 84/195 (43.08%), Postives = 115/195 (58.97%), Query Frame = 3 Query: 99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 TRFSD LS+ L+ L EA + T +Q TI L KDV A TGSGKTLAF+VP++E L R + +IISPTREL+ Q + V + + D + L++GG ++K + ++I N+L+ TPGRL M+ NL++LVLDEADR+LDMGF ++ II LPK R+T LFS+ T Sbjct: 69 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-STDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERINN--INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_CANAL (ATP-dependent RNA helicase DBP4 OS=Candida albicans GN=DBP4 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29 Identity = 78/192 (40.62%), Postives = 118/192 (61.46%), Query Frame = 3 Query: 99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 ++FSDL ++E L+ L EA F T +Q TIP+ +D+ A TGSGKTLAF++P++E L R + + + +I+SPTREL+ QI+ V I + L+ GG +V+ + +++ N+L+GTPGR+ + ++ NL++LVLDEADR LDMGF+KQI I+ LP R+T LFS+ Sbjct: 48 SQFSDLP--ITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESLIR-NKITEYDGLAALIVSPTRELAVQIFEVLTK-IGKYNTFSAGLVTGGKDVQFEKERVSR--MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSA 233
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPOR (ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae GN=dbp4 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29 Identity = 81/198 (40.91%), Postives = 120/198 (60.61%), Query Frame = 3 Query: 93 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 T FSDL LSEP LA + F+ T +Q+ I +D+ A TGSGKTLAF++P++E L R + H +G +I+SPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR+ +++ + D NL++LVLDEADR+LDMGFQK + I+ LPK R+T LFS+ T Sbjct: 43 TYKSFSDLP--LSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSE--HDGLGALILSPTRELAIQIFEVLRK-IGRYHTFSAGLIIGGKSLKEEQERLGR--MNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKERQTLLFSATQT 233
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASHGO (ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii GN=DBP4 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29 Identity = 84/204 (41.18%), Postives = 119/204 (58.33%), Query Frame = 3 Query: 63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 R++ K F DL +S ++ L EA + T +Q A IP+ DV A TGSGKTLAF+VP++E L + ++ISPTREL+ QIY V I + L++GG +VK +++++ + N+LIGTPGRL M++ L+ NL+ILVLDEADR LDMGF+K + I+S LP R+T LFS+ Sbjct: 29 RIKDYDAKTCRAVTFQDLP--ISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEKLYHERWTELDG-LGALVISPTRELAMQIYEVLVK-IGKYMSFSAGLVIGGKDVKFEMERVSK--INILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSRQTLLFSA 226
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29 Identity = 79/188 (42.02%), Postives = 119/188 (63.30%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683 LS+P + A+ + GF TPVQA TIP L + +DV A TGSGKTLAF++P +E+L S KP G +II+PTREL+ QI+ V + + + ++GG + + +K+ +G NLL+ TPGRL D ++ F+NL+ LV+DEADR+L++GF+ ++ II LP + R++ LFS+ T Sbjct: 36 LSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELLH--SLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGI-VIGGANRRQEAEKL-MKGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQT 219 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |