FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_MANSM (ATP-dependent RNA helicase rhlB OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rhlB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 80/197 (40.61%), Postives = 123/197 (62.44%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            L++ RF+DL   L+  VLEAL   GFE+CTP+QA ++P+  + KDVA  A TG+GKT+AF+      L       K +    +I++PTREL+ QI H A+  + T   +K+ L  GG      +K I E GA+++IGT GR+ D + + +++   +++++VLDEADR+ D+GF K I Y++ +   PK R T LFS+
Sbjct:    6 LSQQRFADLP--LNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHHL--LEHPVKTNHPRALIMAPTRELAVQIAHDAERMVKT-TGLKTALAYGGDGYDKQLKAI-EAGADIIIGTTGRIIDYV-KQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCPSPKQRLTLLFSA 195          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_IDILO (ATP-dependent RNA helicase rhlB OS=Idiomarina loihiensis GN=rhlB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 73/188 (38.83%), Postives = 119/188 (63.30%), Query Frame = 3
Query:   84 KALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV-EILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            K LTETRF+DL  AL   + +A++ AGFE+CTP+QA ++P+  S +DVA  A TG+GKTLAF++     +++  SS +       +I++PTREL+ QI H A   I     +K  ++ GG   +   +++  +  ++L+GT GRL D   + D+   +++E++VLDEADR+ D+GF   I Y++ ++P
Sbjct:    4 KHLTETRFADL--ALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHDADALIEHC-GLKMGVIYGGEGYEGQKEQLAAQ-PDILVGTTGRLIDFY-KQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMP 186          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASPNC (ATP-dependent RNA helicase has1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=has1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 81/197 (41.12%), Postives = 127/197 (64.47%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F++L   LSE  ++ + + GFE  T +Q  TIP L + +DV   A TGSGKTL+F++P VE+L   S+ R KP    G +++SPTREL+ QI+ VA+  ++       ++ +GG   +A+ +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  I+  LP + R+T LFS+  T
Sbjct:  126 KFTELN--LSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYGIV-IGGANRRAEAEKLTK-GVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQT 315          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_LODEL (ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus GN=DBP4 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 78/193 (40.41%), Postives = 118/193 (61.14%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            FSDL   +++  L  L E  F   T +Q  +IP+    +D+   A TGSGKTLAF++P++EIL R +   +   +  +I+SPTREL+ QI+ V    I       + L+ GG +V+ + ++I     N+L+GTPGR+   +     ++  NL++LVLDEADR LDMGF+KQI  I++ LP+ R+T LFS+  T
Sbjct:   50 FSDLP--ITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEILLR-NDITEYDGLAALIVSPTRELAVQIFEVLAK-IGKYNSFSAGLVTGGKDVQYEKERISR--MNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTLLFSATHT 236          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_LODEL (ATP-dependent RNA helicase HAS1 OS=Lodderomyces elongisporus GN=HAS1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 83/195 (42.56%), Postives = 122/195 (62.56%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQ-IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +S  K   SEP ++A+ E GF+  T VQA TIP L + +DV   A TGSGKTLAF++P VE+L   S   KP      +II+PTREL+ QI+ VA+  +        + ++GG + + +  K+  +G NLL+ TPGRL D ++      F NL+ LV+DEADR+L++GF++++  II  LP + R+T LFS+  T
Sbjct:   93 YSFEKADFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELL--YSLKIKPRNGTAVIIITPTRELALQIFGVARQLMEYHSQTCGI-VIGGADRRQEATKL-AKGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILPNEDRQTMLFSATQT 283          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX10_MOUSE (Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus GN=Ddx10 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 84/195 (43.08%), Postives = 115/195 (58.97%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            TRFSD    LS+  L+ L EA +   T +Q  TI L    KDV   A TGSGKTLAF+VP++E L R         +  +IISPTREL+ Q + V +  +    D  + L++GG ++K + ++I     N+L+ TPGRL   M+        NL++LVLDEADR+LDMGF   ++ II  LPK R+T LFS+  T
Sbjct:   69 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-STDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERINN--INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQT 257          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_CANAL (ATP-dependent RNA helicase DBP4 OS=Candida albicans GN=DBP4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 78/192 (40.62%), Postives = 118/192 (61.46%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            ++FSDL   ++E  L+ L EA F   T +Q  TIP+    +D+   A TGSGKTLAF++P++E L R +   +   +  +I+SPTREL+ QI+ V    I       + L+ GG +V+ + +++     N+L+GTPGR+   +     ++  NL++LVLDEADR LDMGF+KQI  I+  LP  R+T LFS+
Sbjct:   48 SQFSDLP--ITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESLIR-NKITEYDGLAALIVSPTRELAVQIFEVLTK-IGKYNTFSAGLVTGGKDVQFEKERVSR--MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSA 233          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPOR (ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae GN=dbp4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 81/198 (40.91%), Postives = 120/198 (60.61%), Query Frame = 3
Query:   93 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            T   FSDL   LSEP    LA + F+  T +Q+  I      +D+   A TGSGKTLAF++P++E L R   +   H  +G +I+SPTREL+ QI+ V +  I       + L++GG  +K + +++     N+L+ TPGR+   +++  + D  NL++LVLDEADR+LDMGFQK +  I+  LPK R+T LFS+  T
Sbjct:   43 TYKSFSDLP--LSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSE--HDGLGALILSPTRELAIQIFEVLRK-IGRYHTFSAGLIIGGKSLKEEQERLGR--MNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKERQTLLFSATQT 233          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASHGO (ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii GN=DBP4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 84/204 (41.18%), Postives = 119/204 (58.33%), Query Frame = 3
Query:   63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            R++    K      F DL   +S   ++ L EA +   T +Q A IP+     DV   A TGSGKTLAF+VP++E L           +  ++ISPTREL+ QIY V    I       + L++GG +VK +++++ +   N+LIGTPGRL   M++   L+  NL+ILVLDEADR LDMGF+K +  I+S LP  R+T LFS+
Sbjct:   29 RIKDYDAKTCRAVTFQDLP--ISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEKLYHERWTELDG-LGALVISPTRELAMQIYEVLVK-IGKYMSFSAGLVIGGKDVKFEMERVSK--INILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSRQTLLFSA 226          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 79/188 (42.02%), Postives = 119/188 (63.30%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            LS+P + A+ + GF   TPVQA TIP L + +DV   A TGSGKTLAF++P +E+L   S   KP    G +II+PTREL+ QI+ V +  +        + ++GG   + + +K+  +G NLL+ TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  II  LP + R++ LFS+  T
Sbjct:   36 LSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELLH--SLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGI-VIGGANRRQEAEKL-MKGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQT 219          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_MANSM7.718e-3040.61ATP-dependent RNA helicase rhlB OS=Mannheimia succ... [more]
RHLB_IDILO1.008e-2938.83ATP-dependent RNA helicase rhlB OS=Idiomarina loih... [more]
HAS1_ASPNC1.008e-2941.12ATP-dependent RNA helicase has1 OS=Aspergillus nig... [more]
DBP4_LODEL1.008e-2940.41ATP-dependent RNA helicase DBP4 OS=Lodderomyces el... [more]
HAS1_LODEL1.316e-2942.56ATP-dependent RNA helicase HAS1 OS=Lodderomyces el... [more]
DDX10_MOUSE1.316e-2943.08Probable ATP-dependent RNA helicase DDX10 OS=Mus m... [more]
DBP4_CANAL1.719e-2940.63ATP-dependent RNA helicase DBP4 OS=Candida albican... [more]
DBP4_ASPOR1.719e-2940.91ATP-dependent RNA helicase dbp4 OS=Aspergillus ory... [more]
DBP4_ASHGO1.719e-2941.18ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii... [more]
HAS1_CANGA2.246e-2942.02ATP-dependent RNA helicase HAS1 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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