FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 82/205 (40.00%), Postives = 119/205 (58.05%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E+ P K    + F ++  +LS P+L  L   GF   TP+QA TIP+    KDV   A TGSGKT AFVVP++E  R     +K      +I++PTREL+ Q + VA   +++  D+K  L VGG+ +K    ++     +++I TPGR  D M          +EILVLDEADR+L+ GF  +++ I++ LPK R+T LFS+  T
Sbjct:  283 ENQPKKKGEMSSFQEM--SLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILE--RLLYRPKKVPTTRVVILTPTRELAIQCHAVAVK-LASHTDIKFCLAVGGLSLKVQEAELRLR-PDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 481          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_MAGGR (ATP-dependent RNA helicase DBP4 OS=Magnaporthe grisea GN=DBP4 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 75/194 (38.66%), Postives = 119/194 (61.34%), Query Frame = 3
Query:   93 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            T   F++L   LSEP  + + ++ FE  T +QA  IPL    +D+   A TGSGKTLAF+VPL+E L R    ++  ++  +++SPTREL+ Q + V +  I       + L++GG  V+ + + +     N+LIGTPGR+   +++    D  NL++LVLDEADR++D+GFQ+ +  ++  LP  R+T LFS+
Sbjct:   47 TPKAFAELP--LSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEA-KLGALVLSPTRELAVQTFQVLRK-IGRHHLFSAGLVIGGKSVREEAEALSR--MNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTRQTLLFSA 234          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPW (ATP-dependent RNA helicase rhlB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rhlB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 82/202 (40.59%), Postives = 125/202 (61.88%), Query Frame = 3
Query:   90 LTETRFSDLKPA---LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674
            ++ET  S  K A   L + V +AL E GFEFCTP+QA ++P+L + KD+A  A TG+GKTLAF+V      +   A + RK +Q   +I++PTREL+ QI   A   ++    +K  ++ GG   +A  +K+ ++G ++LIGT GR+ D + R  V+D   ++ +VLDEADR+ D+GF K I ++  R+P  K R   LFS+
Sbjct:    1 MSETHLSTKKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDAN-LLAKHTGLKVGIVYGGEGYEAQ-RKVLDKGIDILIGTTGRIIDYV-RQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH26_ORYSJ (DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica GN=Os01g0618500 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 74/197 (37.56%), Postives = 122/197 (61.93%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L+ETRF      +S   L+A+ +AG+E  T VQ AT+P++   +DV   A TG+GKT+AF++P +E+L   S+  +   I  ++I PTREL++Q+   A+  +     +   +++GG ++  + + ++     +L+ TPGRL D +E         + +++LVLDEADRLLDMGF++ I  II+ +PK R+T LFS+
Sbjct:   71 LSETRFDQCP--VSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPAIELL---STLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVATPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDIEKIIAFIPKERQTLLFSA 262          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_NEOFI (ATP-dependent RNA helicase has1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=has1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 82/197 (41.62%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F++L   L+E  L+A+ + GF+  T +Q  TIP L + +DV   A TGSGKTL+F++P VE+L   S+ R KP    G+I+ SPTREL+ QI+ VA+           ++ +GG   +A+ +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  I+  LP + R+T LFS+  T
Sbjct:  141 KFTEL--GLTEKTLKAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML---SALRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIV-IGGANRRAEAEKLMK-GVNLLIATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQT 330          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_KLULA (ATP-dependent RNA helicase HAS1 OS=Kluyveromyces lactis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 84/198 (42.42%), Postives = 123/198 (62.12%), Query Frame = 3
Query:   96 ETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            E  FSDLK  LS+  ++A+ + GF   T VQ  TIP L + KDV   A TGSGKTLAF++P +E+L   S   KP    G+I I+PTREL+ QI+ VA+  +        ++ +GG   + +  K+ + G N+LI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  II  LP + R++ LFS+  T
Sbjct:   33 EGSFSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLH--SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIV-IGGANRRQEADKLMK-GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQT 224          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPA-LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E +  K++  T  S  +   LS P+L+ L+  GFE  T +Q  TIPL    KD+   A TGSGKT AF+VP++E  R     +K      +I+ PTREL+ Q + VA   I++  D+   L +GG+ +K   +++ +   +++I TPGR  D M         N+EI+V+DEADR+L+ GF  +++ II   PK R+T LFS+  T
Sbjct:  246 EGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE--RLLYRPKKVPTTRVLILCPTRELAMQCHSVATK-IASFTDIMVCLCIGGLSLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMT 447          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX18_MOUSE (ATP-dependent RNA helicase DDX18 OS=Mus musculus GN=Ddx18 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 76/200 (38.00%), Postives = 122/200 (61.00%), Query Frame = 3
Query:   87 ALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            A  +T F+ L   ++E  L+A+ E GF+  T +Q  +I  L   +D+   A TGSGKTLAF++P++E++ +      P    G +I+SPTREL+ Q + V +  ++        L++GG    A+V+K+   G N+++ TPGRL D M+      ++NL+ LV+DEADR+LD+GF++++  II  LP  R+T LFS+  T
Sbjct:  163 AFEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFM--PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYG-LIMGGSNRSAEVQKLLN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQT 358          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_USTMA (ATP-dependent RNA helicase DBP4 OS=Ustilago maydis GN=DBP4 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 78/187 (41.71%), Postives = 115/187 (61.50%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            LS+     L  AG+   T +QA ++ L    KDV   A TGSGKTLAF++P++EIL R      P   +G ++ISPTREL+ QI+ V +  I +     + L++GG +VK +  ++     N+LI TPGRL   M++    D  N+++LVLDEADR+LDMGF + ++ I+  LP+ R+T LFS+  T
Sbjct:   65 LSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPVLEILYRRKWG--PSDGLGALVISPTRELAIQIFEVLRK-IGSYHTFSAGLVIGGKDVKQEKDRLSR--INILIATPGRLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTLNAIVENLPRNRQTMLFSATQT 246          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_VANPO (ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 81/190 (42.63%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            F DL   +S   L+ L ++ F   T +Q  +IP+     D+   A TGSGKTLAF++P++E L R         +  +IISPTREL+ QIY V    I T     + L++GG +VK ++++I +   N+LIGTPGR+   M++   L+  NL++LVLDEADR LDMGF+K +  I+S LP  R+T LFS+
Sbjct:   43 FKDLP--ISNSTLKGLNDSAFLKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEKLYRERWTEFDG-LGALIISPTRELAMQIYEVLLK-IGTSTSFSAGLVIGGKDVKFEMERISK--INILIGTPGRILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPTRQTLLFSA 226          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_NEUCR2.246e-2940.00ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DBP4_MAGGR2.246e-2938.66ATP-dependent RNA helicase DBP4 OS=Magnaporthe gri... [more]
RHLB_SHEPW2.933e-2940.59ATP-dependent RNA helicase rhlB OS=Shewanella piez... [more]
RH26_ORYSJ2.933e-2937.56DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sa... [more]
HAS1_NEOFI2.933e-2941.62ATP-dependent RNA helicase has1 OS=Neosartorya fis... [more]
HAS1_KLULA2.933e-2942.42ATP-dependent RNA helicase HAS1 OS=Kluyveromyces l... [more]
DRS1_SCHPO2.933e-2937.86ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DDX18_MOUSE2.933e-2938.00ATP-dependent RNA helicase DDX18 OS=Mus musculus G... [more]
DBP4_USTMA2.933e-2941.71ATP-dependent RNA helicase DBP4 OS=Ustilago maydis... [more]
DBP4_VANPO3.830e-2942.63ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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