FC868824

Overview
NameFC868824
Unique NameFC868824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868824_ssr40 microsatellite FC868824_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  295 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 555
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAG 142          
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  346 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 555
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+  G
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WYDAG 131          
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  346 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 555
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG 130          
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 1
Query:  346 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 633
            P YL G  PGD+G+D  GL + P +  +Y+  ELIH RWAML   G I+PEA      N      W       + G    Y G+ +P   +  ++A
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL--GNWVKAQEW-----AAIPGGQATYLGQPVPWGTLPTILA 144          
The following BLAST results are available for this feature:
BLAST of FC868824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_SOLLC2.673e-1343.68Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH1.327e-1245.71Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA6.585e-1244.29Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB11_SOLLC9.508e-1135.42Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31005C02EF AbioticL1 Citrus clementina cDNA clone C31005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868824 ID=FC868824; Name=FC868824; organism=Citrus clementina; type=EST; length=646bp
GACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAAC
ATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTG
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