FC868830

Overview
NameFC868830
Unique NameFC868830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:4..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  G
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  G
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  G
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 77          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  G
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  G
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 70/195 (35.90%), Postives = 96/195 (49.23%), Query Frame = 3
Query:  156 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM + VG
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVG 204          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 65/162 (40.12%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ + VG
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVG 205          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  486 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFS  G
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFG 85          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 73/239 (30.54%), Postives = 107/239 (44.77%), Query Frame = 3
Query:   63 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSHVG 737
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM + +G
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 64/182 (35.16%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  213 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSHVG 737
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM + +G
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
The following BLAST results are available for this feature:
BLAST of FC868830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2F_SOLLC4.393e-2166.23Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.393e-2166.23Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC4.393e-2166.23Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.393e-2166.23Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.393e-2166.23Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB121_HORVU5.738e-2135.90Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC5.738e-2140.12Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_RAPSA1.278e-2061.18Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC6.344e-2030.54Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.413e-1935.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31005C11EF AbioticL1 Citrus clementina cDNA clone C31005C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868830 ID=FC868830; Name=FC868830; organism=Citrus clementina; type=EST; length=738bp
AATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCA
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTC
TTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTT
GGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCT
CAAGAATGGCCGTCTGGCTATGTTCTCCCATGTTGGAT
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