FC868830
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS G Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS G Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS G Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 77
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS G Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 507 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS G Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21 Identity = 70/195 (35.90%), Postives = 96/195 (49.23%), Query Frame = 3 Query: 156 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R AFDPLG + DP +F ELK+KE+KNGRLAM + VG Sbjct: 40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVG 204
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21 Identity = 65/162 (40.12%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 PSYL G PGD+G+D+ GL P + +E E+IH RWAML G + PE L G W KA GG YLG P + ++ I A + + + FVE R AFDPLG + DP +F ELKVKE+KNGRLA+ + VG Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVG 205
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20 Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 3 Query: 486 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737 LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPL DP+ FAELKVKE+KNGRLAMFS G Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFG 85
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20 Identity = 73/239 (30.54%), Postives = 107/239 (44.77%), Query Frame = 3 Query: 63 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSHVG 737 A+S I AF+ ++ R + GGR +TP + + PDRP + P +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G PE+L+K G+ W+ AG Q + + L + +L WA ++ G V I FDPLG P + EL+ KE+KNGRLAM + +G Sbjct: 6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19 Identity = 64/182 (35.16%), Postives = 86/182 (47.25%), Query Frame = 3 Query: 213 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSHVG 737 PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q + + L + +L WA ++ G V I FDPLG P + EL+ KE+KNGRLAM + +G Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235 The following BLAST results are available for this feature:
BLAST of FC868830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868830 ID=FC868830; Name=FC868830; organism=Citrus clementina; type=EST; length=738bpback to top |