FC868830

Overview
NameFC868830
Unique NameFC868830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:4..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 87/257 (33.85%), Postives = 117/257 (45.53%), Query Frame = 3
Query:   60 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            MAT A+  S+   FA + A+RQS         VG +  G +       +TP     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM + +G
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 240          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 84/259 (32.43%), Postives = 117/259 (45.17%), Query Frame = 3
Query:   60 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            MAT A+  S+     ++  S E  R++    G RI+   T K        STP  +  G +R  +    S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM + +G
Sbjct:    1 MATQALISSS-----SISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILG 238          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 45/79 (56.96%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  510 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM   +G
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLG 83          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 56/163 (34.36%), Postives = 75/163 (46.01%), Query Frame = 3
Query:  252 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            +P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +K G+      W+ AG  Q F+     ++    L H   I   W   +   G V    I                 F+PL  A  P Q  E K KEL NGRLAM + +G
Sbjct:   63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLG 218          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 50/163 (30.67%), Postives = 72/163 (44.17%), Query Frame = 3
Query:  249 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +                    L +    + +    E +R                  FDPL L  D  + A     E+KNGRLA+ +  G
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLALTAVAG 327          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 65/217 (29.95%), Postives = 89/217 (41.01%), Query Frame = 3
Query:  216 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVG 737
            DRP +      ++P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM   +G
Sbjct:   51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLG 252          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 62/226 (27.43%), Postives = 84/226 (37.17%), Query Frame = 3
Query:  141 GVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFS 728
            GV+   R  +     + P+  W     P   G  +   P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG          G  +    WF+AGA            +P  +   S   +   Q++LMG+VE  R                                       FDPL LA          D D+   LK+ E+K+ RLAM +
Sbjct:   39 GVSTTSRKLVVVAAAAAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLA 241          
BLAST of FC868830 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 56/188 (29.79%), Postives = 71/188 (37.77%), Query Frame = 3
Query:  255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFS 728
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG+VE  R                                       FDPL LA          D ++   LKV E+K+ RLAM +
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLA 236          
The following BLAST results are available for this feature:
BLAST of FC868830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_PEA2.947e-1733.85Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC2.112e-1532.43Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR3.983e-1456.96Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_ARATH7.511e-1334.36Chlorophyll a-b binding protein 4, chloroplastic O... [more]
LH18_EUGGR1.281e-1230.67Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4B_ARATH1.085e-1129.95Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4_SPIOL2.416e-1127.43Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC3.156e-1129.79Chlorophyll a-b binding protein CP24 10A, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC31005C11EF AbioticL1 Citrus clementina cDNA clone C31005C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868830 ID=FC868830; Name=FC868830; organism=Citrus clementina; type=EST; length=738bp
AATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCA
TAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCA
GACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTG
ACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGC
ATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCA
AACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATA
CCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTA
GAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTT
CCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGT
TCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGC
AACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCA
GGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTC
TTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTT
GGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCT
CAAGAATGGCCGTCTGGCTATGTTCTCCCATGTTGGAT
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