FC869012

Overview
NameFC869012
Unique NameFC869012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.633e-38
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  244 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT   IYGP TG DY+
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYK 192          
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.633e-38
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  244 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT   IYGP TG DY+
Sbjct:   44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYK 192          
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  244 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687
            D   +    S  AT +Q       S+  PS+++   G G+N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT   IYGP TG DY+
Sbjct:   44 DASSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYK 192          
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.752e-38
Identity = 82/167 (49.10%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  196 KFRCMKHSGLRSLNIIDE-LQVKTMASKLAT--SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687
            +FR     GLR  N  D  L ++T+ +  A   SR+A R   R  +   ++   G G+N++FVG E+APWSKT                  HRVM ++PRYDQYKDAWDT V+ E+KV D+ E+VRFFHC+KRGVDRVF+DHPWFL KV GKT+  IYGP  G DY+
Sbjct:   21 RFRRPGFQGLRPRNPADAALGMRTIGASAAPKQSRKAHRGSRRCLS--VVVSATGSGMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVISEIKVADEYERVRFFHCYKRGVDRVFIDHPWFLEKVRGKTKEKIYGPDAGTDYE 185          
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35
Identity = 78/166 (46.99%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  196 KFRCMKHSGLRSLNIIDE-LQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVG-LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687
            +FR     GLR  N  D  L ++T+ +  A  +    + F  +    ++   G G +N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT V+ E+KV D+ E+VR+FHC+KRGVDRVFVDHP FL KV GKT+  IYGP  G DY+
Sbjct:   21 RFRRPGFQGLRPRNPADAALGMRTVGASAAPKQSRKPHRFDRRCLSMVVRATGSGGMNLVFVGAEMAPWSKTGGLGDVLGGLPAAMAANGHRVMVISPRYDQYKDAWDTSVISEIKVVDRYERVRYFHCYKRGVDRVFVDHPCFLEKVRGKTKEKIYGPDAGTDYE 186          
The following BLAST results are available for this feature:
BLAST of FC869012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_ORYSI1.633e-3852.35Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL1.633e-3852.35Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA2.133e-3852.35Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU4.752e-3849.10Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT8.388e-3546.99Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionC31007E12EF AbioticL1 Citrus clementina cDNA clone C31007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869012 ID=FC869012; Name=FC869012; organism=Citrus clementina; type=EST; length=700bp
GGTTCGCTTCACGTTCATTCATCGACGCTTGAGCACCAGATTTCATCAGG
AAACTAAGAGGGAAACAAATCTTCAGCAGAGACTACAAACATAATAATAT
CAGCTATGGCTACCGCTGTAGCCGCTTCAAGCTTCGTCTCAAGGAGTTAT
GGACATGAGGTAGCTTCAGGATTGAATAGTAAGGCATCACAGATGAAATT
TAGGTGTATGAAGCACAGTGGGCTGAGAAGTTTAAATATCATAGACGAAC
TCCAAGTGAAAACAATGGCATCAAAACTAGCCACCAGCAGGCAAGCTGGG
AGGAATGGATTTAGAAGCCAGAACGGGCCATCCTTAATGATTGTTTGTGG
GGTTGGCCTGAATATCCTCTTTGTTGGAACAGAGGTTGCTCCTTGGAGTA
AAACTGGGGGACTTGGTGATGTTCTTGGAGGTCTGCCACCAGCACTGGCC
GCCAATGGGCACCGTGTCATGACGATTGCACCCCGATATGACCAGTACAA
AGATGCTTGGGATACTGATGTTGTAATTGAGCTGAAAGTTGGAGACAAAA
TTGAAAAAGTTCGCTTCTTTCATTGCCACAAGAGAGGAGTTGATCGGGTG
TTTGTGGATCATCCTTGGTTTCTTGCGAAGGTGTGGGGTAAAACCCAATC
CNAAATCTATGGGCCTAGGACTGGAGAGGACTACCAGACAACCAACTCGC
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