FC869012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 1.633e-38 Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 1 Query: 244 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687 D + S AT +Q S+ PS+++ G G+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT IYGP TG DY+ Sbjct: 44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYK 192
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.633e-38 Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 1 Query: 244 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687 D + S AT +Q S+ PS+++ G G+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT IYGP TG DY+ Sbjct: 44 DATSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYK 192
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38 Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = 1 Query: 244 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVC-GVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687 D + S AT +Q S+ PS+++ G G+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+KV D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT IYGP TG DY+ Sbjct: 44 DASSLSVTTSARATPKQQRSVQRGSRRFPSVVVYATGAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYK 192
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.752e-38 Identity = 82/167 (49.10%), Postives = 105/167 (62.87%), Query Frame = 1 Query: 196 KFRCMKHSGLRSLNIIDE-LQVKTMASKLAT--SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687 +FR GLR N D L ++T+ + A SR+A R R + ++ G G+N++FVG E+APWSKT HRVM ++PRYDQYKDAWDT V+ E+KV D+ E+VRFFHC+KRGVDRVF+DHPWFL KV GKT+ IYGP G DY+ Sbjct: 21 RFRRPGFQGLRPRNPADAALGMRTIGASAAPKQSRKAHRGSRRCLS--VVVSATGSGMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVISEIKVADEYERVRFFHCYKRGVDRVFIDHPWFLEKVRGKTKEKIYGPDAGTDYE 185
BLAST of FC869012 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35 Identity = 78/166 (46.99%), Postives = 101/166 (60.84%), Query Frame = 1 Query: 196 KFRCMKHSGLRSLNIIDE-LQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVG-LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSXIYGPRTGEDYQ 687 +FR GLR N D L ++T+ + A + + F + ++ G G +N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT V+ E+KV D+ E+VR+FHC+KRGVDRVFVDHP FL KV GKT+ IYGP G DY+ Sbjct: 21 RFRRPGFQGLRPRNPADAALGMRTVGASAAPKQSRKPHRFDRRCLSMVVRATGSGGMNLVFVGAEMAPWSKTGGLGDVLGGLPAAMAANGHRVMVISPRYDQYKDAWDTSVISEIKVVDRYERVRYFHCYKRGVDRVFVDHPCFLEKVRGKTKEKIYGPDAGTDYE 186 The following BLAST results are available for this feature:
BLAST of FC869012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869012 ID=FC869012; Name=FC869012; organism=Citrus clementina; type=EST; length=700bpback to top |