FC869039

Overview
NameFC869039
Unique NameFC869039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 91/146 (62.33%), Postives = 111/146 (76.03%), Query Frame = 1
Query:  283 DVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            D +Q IGKTP+V LN IVKG  A + AK+E   P  SVK RIG +MI DAEQ+GL+ PGK  L+EPTSGNTGI LAF+AA++G  L LTMP +MSLERR LL A+GA+LVLT+  KGM GAV++AE+I  S P+ Y +LQQF NPA
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRRAEDIAASDPDRYVLLQQFRNPA 154          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+  KGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPA 148          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+  KGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPA 148          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+  KGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPA 148          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+  KGMKGA+QKAEEI+ S P  Y +LQQF NPA
Sbjct:    4 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPA 148          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 78/151 (51.66%), Postives = 109/151 (72.19%), Query Frame = 1
Query:  268 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            + IA  +T+LIG TP+V LN + +G  A +A KLE   P  SVKDRI  +MI  AE+ G I    +++VE TSGNTG+GLA + A++GYKL +TMP SMS ER++LL+AFGAEL+LT + +GM GA+ KA+ ++++ P+ Y M +QFDN A
Sbjct:    1 MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEA 150          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 76/148 (51.35%), Postives = 108/148 (72.97%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 717
            I + +T+L+G+TP++ LN ++    A++  KLE   P  SVKDRI  SMI  AE +GLI+PG  +++EPTSGNTGIGLA++ A+KGY++I+ MP +MSLERR +++A+GAELVLT   +GMKGA+ K E +      A+M  QF+NPA
Sbjct:    4 IYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPG-DVIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAKTETLAIEL-GAWMPMQFNNPA 149          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 79/146 (54.11%), Postives = 103/146 (70.55%), Query Frame = 1
Query:  280 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 717
            ++  + IG TP+V +N +       I  KLE   P  S+KDRI  +MI DAE KGL+    +I +EPTSGNTGIGLA +AA KGYKLIL MP SMS+ERR +++A+GAE VLT   KGMKGA++KA E+   TPN+++ +QFDNPA
Sbjct:    4 QNALETIGNTPVVKINNLFNSD-HEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNKDSTI-IEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSWIPRQFDNPA 147          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-35
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 1
Query:  286 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 717
            VTQ+IG TP+V L  +V    A+I  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT   + MKGA++KA+E L      +  QQF+NPA
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-35
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 1
Query:  286 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 717
            VTQ+IG TP+V L  +V    A+I  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT   + MKGA++KA+E L      +  QQF+NPA
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKE-LKEEHGYFEPQQFENPA 150          
The following BLAST results are available for this feature:
BLAST of FC869039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SRPG_SYNE71.061e-4062.33Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_ECOLI5.823e-3961.07Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO575.823e-3961.07Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_SALTY7.605e-3961.07Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI7.605e-3961.07Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_NEIMB2.071e-3651.66Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_STRP66.025e-3651.35Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_FLAS37.870e-3654.11Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSK_STAES1.028e-3557.64Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ1.028e-3557.64Cysteine synthase OS=Staphylococcus epidermidis (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007H03EF AbioticL1 Citrus clementina cDNA clone C31007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869039 ID=FC869039; Name=FC869039; organism=Citrus clementina; type=EST; length=718bp
GGTAGCATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAA
AACAATGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTC
TCTGCATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATT
AGCCCCATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTC
TTACAAACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGC
AGACTGGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATT
GGGAAGACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGC
AAACATTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGG
ACAGGATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATA
ACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAAT
TGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTA
TGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGA
GCTGAGCTTGTATTAACTGATTCAGNCAAAGGCATGAAGGGGGCTGTGCA
GAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGC
AATTTGACAATCCTGCTA
back to top