FC869193

Overview
NameFC869193
Unique NameFC869193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.155e-98
Identity = 176/207 (85.02%), Postives = 185/207 (89.37%), Query Frame = 3
Query:   87 GKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            GKAV L PS  E+G   R+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAI A QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   16 GKAVKLGPSAPEVG---RVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAM 219          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.120e-98
Identity = 175/209 (83.73%), Postives = 185/209 (88.52%), Query Frame = 3
Query:   87 GKAVNLAPSGNELGNGGRISMRKTASK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            GKAV L P+ +E+   GRI+MRKTA K  +V S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.566e-97
Identity = 174/211 (82.46%), Postives = 187/211 (88.63%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAVN+ PS +++   G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   13 FAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAM 222          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.045e-97
Identity = 172/211 (81.52%), Postives = 187/211 (88.63%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+PS +E+   G+++MRKTASK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.771e-97
Identity = 171/211 (81.04%), Postives = 185/211 (87.68%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVR-NQEWRLAM 704
            F GK V L+PS +E+   G+ +MRKTA+K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAI ACQV+LMGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   13 FAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.731e-96
Identity = 170/211 (80.57%), Postives = 184/211 (87.20%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+ S +E+   G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   13 FAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.953e-96
Identity = 171/211 (81.04%), Postives = 185/211 (87.68%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAVN+ PS +E+   G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   13 FAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAM 222          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.569e-95
Identity = 174/212 (82.08%), Postives = 184/212 (86.79%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAVN+  S        R++MRKTA+K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPE      V+  ++ RLAM
Sbjct:   13 FAGKAVNVPSSSF---GEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAM 221          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.569e-95
Identity = 172/201 (85.57%), Postives = 181/201 (90.05%), Query Frame = 3
Query:  105 APSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            +PS  +LG G R+SMRKTASK+VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAI A QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPE      V+  +  RLAM
Sbjct:    2 SPSTPQLGVG-RVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAM 201          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.116e-94
Identity = 169/207 (81.64%), Postives = 181/207 (87.44%), Query Frame = 3
Query:   87 GKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+I A QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAM 220          
The following BLAST results are available for this feature:
BLAST of FC869193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_SOYBN3.155e-9885.02Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2A_SPIOL4.120e-9883.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP1.566e-9782.46Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL2.045e-9781.52Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_PETSP7.771e-9781.04Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_PETSP1.731e-9680.57Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP2.953e-9681.04Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_MAIZE5.569e-9582.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN5.569e-9585.57Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_APIGR2.116e-9481.64Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31009E07EF AbioticL1 Citrus clementina cDNA clone C31009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869193 ID=FC869193; Name=FC869193; organism=Citrus clementina; type=EST; length=704bp
CAGCTGCTCTTGTCTGCACAACTTCGGCTTCTGAATTAAATTCCGCAATG
GCCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAA
CCTTGCCCCTTCAGGCAATGAGCTGGGCAATGGTGGCCGCATCTCCATGC
GTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTT
GACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGCGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCAGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATC
CACGCCCAGAGCATCTTGGCCATCTGAGCTTGCCAGGTGGTATTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGCTTTTGCTGAGCTCAAGTGTAAGGAATCAAGAATGGAGGTTGGC
TATG
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