FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  405 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            K+T KV+FD++ G KP GRIVMGL+G  VPKTAENFRAL TGEKG+GY+G +FHR+IK FMIQ             SIYG  F DE+F LKH
Sbjct:   32 KITHKVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKH 123          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  405 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            K+T+KVFFD++ G KP GRIV+GL+G  VPKTAENFRAL TGEKG+GY+G +FHR+IK FMIQ             SIYG  F DE+F L+H
Sbjct:   33 KITSKVFFDIEHGDKPLGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRH 124          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +T KV+FD++ GGKP GRIVMGL+G  VPKTAENFRAL TG+       GYGY+G SFHRIIK+FMIQ             SIYGS F DE+F LKH G
Sbjct:   43 ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTG 141          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  375 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            S+A D +   KVT KV+FD  IG +P GR+  GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH G
Sbjct:   31 SVANDKKKGPKVTVKVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 134          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 62/108 (57.41%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  384 KDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            K  E   ++T KV+FDV+I GK AGRIVMGLFG  VPKT ENFRALCTGEKG G       YKG SFHRII  FM+Q             SIYG  F DE+F LKH G
Sbjct:   25 KSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTG 132          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  375 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            S A + +   KVT KVFFD+ +G + AGR+V+GLFG  VPKT ENF AL TGEKG+G+KG  FHR+IKDFMIQ             SIYG  F DE+F LKH G
Sbjct:   22 SRADERKKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYG 125          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 67/132 (50.76%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  327 LSKAPSVKYRRMFCVNSMAKDVELQAK-----VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            ++KA  +    +F   ++A    +QAK     VT KV+FDV+I GK AGR+V+GLFG  VPKTAENFRALCTGEKG G       YKG  FHRII  FMIQ             SIYG  F DE+F LKH G
Sbjct:    1 MAKASFILLGTLFLFGAIAS---IQAKEDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTG 129          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  375 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            S+A D +   KVT KV+FD+ IG +  GR+V GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH G
Sbjct:   31 SVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 134          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  393 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            E  A++T KV+FD+  G +  G+IVMGL+GDVVPKT ENFRALCTGE G GYKG  FHR+IK+FMIQ             SIYG  F DE+F LKH
Sbjct:   25 EPDAEITHKVYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKGYKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKH 120          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V+ DVD  GKP GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVG
Sbjct:   48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVG 136          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PPIB_NEUCR3.999e-2660.87Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_ASPFU3.999e-2659.78Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_CRYNE8.908e-2659.60Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPIB_RAT1.519e-2554.81Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
CP20A_ARATH1.519e-2557.41Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIB_CHICK1.985e-2555.77Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
CP19D_ARATH1.985e-2550.76Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_MOUSE2.592e-2554.81Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIB_YARLI4.421e-2558.33Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIF_HUMAN5.774e-2561.80Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
back to top