FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG----YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            ++T  +F + I GK    I   LF +VVPKT +NF +LC G +  G    YKG  FHR+IK+FM+Q             SIYG  FEDE+F LKH
Sbjct:    1 MSTYAYFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKH 95          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  396 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALC-TGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHV 683
            L   VT+K++ DV    KP GRIV GLFG   PKT  NFR +C  G  G  Y G  FHR+I  F+IQ             SIYG  F+DE+  ++H+
Sbjct:   20 LSFTVTSKIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFRHICLRGINGTTYVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHL 116          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:  384 KDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRAL-CTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +D     ++T KV+FD++ G K  GRIVMGL+G   P+T ENF  L  + +   GY    FHR+I +FMIQ             SI+G++F+DE+F +KH
Sbjct:   24 EDTAEDPEITHKVYFDINHGDKQIGRIVMGLYGLTTPQTVENFYQLTISRDPKMGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKH 123          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 3
Query:  342 SVKYRRMFCVNSMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALC-TGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVL 674
            S+  R + C   +A    L   VT++++ DV    KP GRI  GLFG + PKT  NFR +C  G  G  Y G  FHR++  F++Q            ISIYG  F DE   L
Sbjct:    3 SLLNRIILCSAFLAVASGLSFTVTSRIYMDVKHNKKPVGRITFGLFGKLAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKAL 114          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            VF D+ I   P GR++  L+ DV PKT +NF+ LCTG+ G+        YK   FHRI+++  IQ             SIYG +FEDE+F + H
Sbjct:  144 VFLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPH 237          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            VF D+ I   P GR++  L+ D  PKT +NF+ LCTG+ G+        Y G  FHR++++  +Q             SIYG +FEDE+F + H
Sbjct:  140 VFLDISIDLYPIGRLIFELYSDTCPKTCKNFQILCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPH 233          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIL6_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus musculus GN=Ppil6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            V+ D+ I   P GR++  L+ D  P+T  NF+ LCTG  G+        YK   FHR++++  IQ             SIYG +FEDE+F + H
Sbjct:  146 VYLDICIDLSPIGRLIFELYCDACPRTCTNFQVLCTGTSGFSERGTKLHYKDSIFHRVVQNGWIQGGDIVQGRGDDGESIYGPTFEDENFSIPH 239          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PPID_SCHPO4.586e-1444.2140 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
CYPR_CALVI4.586e-1443.30Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPD_YEAST5.989e-1441.00Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
CYPR_DROME1.022e-1338.39Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL6_HUMAN6.622e-1340.43Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIL6_BOVIN3.286e-1237.23Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIL6_MOUSE8.094e-1136.17Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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