FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  393 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            EL  +    VFFDV   G+P GRI M LF ++VP+TAENFRALCTGEKG+G+K   FHR+I DF+ Q             SIYG  FEDE+F +KH G
Sbjct: 3057 ELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTG 3154          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 54/91 (59.34%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  414 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            ++V+ D+ IG   AGRI + L GDVVPKTAENFRALCTGE G+GYK  SFHRII  FM Q             SIYG  FEDE+FVLKH G
Sbjct:  155 SRVYLDIQIGNTLAGRIEIELRGDVVPKTAENFRALCTGEAGFGYKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTG 245          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 52/93 (55.91%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 52/93 (55.91%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 52/93 (55.91%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 52/93 (55.91%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 55/97 (56.70%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +VFFD+ I GKP GRIVM L+ D+VPKTAENFRALCTGEKG G       +KG  FHRII +FMIQ             SIYG  F DE+F  KH G
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 57/104 (54.81%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  396 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            + AK   KVFFDV + GKP+GR+   LF D VPKTAENFRALCTGEKG G       YKG  FHRII  FM Q             SIYG  F DE+F LKH G
Sbjct:    1 MAAKNLPKVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTG 104          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23
Identity = 51/98 (52.04%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  393 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            EL       VFFDV   G+P GRI+M LF ++VP+TAENFRALCTGEKG+G+K   FHR++ DF+ Q             SIYG  F+DE+F LKH G
Sbjct: 2886 ELSKDTNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTG 2983          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:    6 VFFDIAVDGEPLGRVSFDLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTG 94          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RBP2_HUMAN5.404e-2353.06E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPIE_RHIOR5.404e-2359.34Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_SAGOE5.404e-2355.91Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_PIG5.404e-2355.91Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_BOVIN5.404e-2355.91Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIA_AOTTR5.404e-2355.91Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYP7_CAEEL5.404e-2356.70Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP5_RHIOR5.404e-2354.81Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
RBP2_MOUSE7.058e-2352.04E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIA_FELCA7.058e-2357.30Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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