FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23
Identity = 54/93 (58.06%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  402 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +++  KVFFD  + G   GRI   L+ +VVPKTAENFRALCTGEKG+GYKG  FHRII DFMIQ             SIYGS F DE+FV KH
Sbjct:   18 SRLGKKVFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWGYKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKH 110          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 53/93 (56.99%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+    +P GR+   LF D VPKTAENFRAL TGEKG+GYKG SFHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 52/86 (60.47%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  423 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            FFDV   G+P GRIV  LF DVVPKTA NFRALCTGEKGYGY G +FHR+I  FM+Q             SIYG  F DE+F LKH
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKH 90          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 54/94 (57.45%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  405 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVT KV+FD++IGGKP GRIV+GLFG  VPKTA NF  L    KG GY G  FHR+I DFMIQ             SIYG  F DE+F LKH G
Sbjct:   26 KVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYG 119          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 55/97 (56.70%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVFFD+ IGGK  GRIVM L+ D+VPKTAENFRALCTGEKG G       +KG  FHRII +FMIQ             SI+G  F+DE+F  KH G
Sbjct:    5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V+ DV   G+P GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKH G
Sbjct:   49 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEG 137          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  399 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            Q +   +VFFD+ IG   AGRIVM L  D+VP+TAENFRALCTGE+G+GY  C FHR+I  FM Q             SIYG  F+DE+F L+H G
Sbjct:  107 QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEG 202          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 55/97 (56.70%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVFFD+ IGG PAG+IVM L+ D  PKTAENFRALCTGEKG G       +KG SFHR+I +FM Q             SIYG+ FEDE+F  KH G
Sbjct:    6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTG 102          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KV+FD+ +GGK AGRIVM L+ D  P+TAENFRALCTGE+G G       YKG SFHR+I  FM Q             SIYGS F+DE+F+ KH G
Sbjct:    6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTG 102          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +T K++FD+  G +  GRIV+GL+G  VPKTAENF+ L TGE GYGYKG +FHR+IK FMIQ             SIYG+ F DE+F L+H
Sbjct:   32 ITDKIYFDIKQGDESLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRH 122          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CYPC_YEAST7.058e-2358.06Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIA_MOUSE9.218e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
CYPH_SCHPO9.218e-2360.47Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CYP5_CAEEL9.218e-2357.45Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CYP2_CAEEL9.218e-2356.70Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIF_BOVIN1.204e-2258.43Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_SCHMA1.572e-2253.13Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
CP19B_ARATH1.572e-2256.70Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP19A_ARATH1.572e-2254.64Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIB1_RHIOR2.054e-2253.85Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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