FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +VFFD+   G+  GRIVM L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q             SIYG  F DE+F LKH
Sbjct:    5 QVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKH 92          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +VFFD+ +GG+PAGRIVM LF D  P+TAENFRALCTGEKG G       YK  SFHR+I  FM Q             SIYG+ F DE+F+ KH G
Sbjct:    5 RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  414 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            ++V+FDV+  G+P GR+V  L+ D+VPKTAENFRALCTGEKG+GY G  FHR+I DFM+Q             SIYG  F DE+F   H
Sbjct:    2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHH 90          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +V+FD+ IGGK  GRI M L+ D+VPKTA+NFR+LCTGEKG G       YKG  FHR+IK FMIQ             SIYG+ F+DE+F +KH
Sbjct:   12 RVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKH 106          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 51/98 (52.04%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +  KVFF +  G  P GR+V  L+ D+VPKTAENFRALCTGEKG G       YKG SFHR+IK+FM+Q             SIYG +F DE+F++KH
Sbjct:    5 IRNKVFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKH 102          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 55/96 (57.29%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            KVFFD+   GKP GR+V  L+ DVVPKTAENFRALCTGEKG          YKG  FHRIIKDFM Q             SIYG  FEDE+F L H
Sbjct:    9 KVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTH 104          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  393 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            E   +    VFFD+    +P GRI M LF ++VPKTAENFRALCTGEKG+G+K   FHR+I DF+ Q             SIYG  FEDE+F +KH G
Sbjct:  918 EFSKETNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTG 1015          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 51/96 (53.12%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK C FHR++KDFM+Q             SIYG  FEDESF +KH
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKH 104          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 51/96 (53.12%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK C FHR++KDFM+Q             SIYG  FEDESF +KH
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKH 104          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 51/96 (53.12%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            + FFD+ I  +PAGR+V  LF DV PKT ENFR LCTGEKG G        YK C FHR++KDFM+Q             SIYG  FEDESF +KH
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKH 104          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PPIA_HEMPU2.054e-2259.09Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
CYPH_CATRO2.054e-2254.64Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_YEAST3.503e-2253.93Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPID_GIBZE4.575e-2253.68Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPID_DICDI4.575e-2252.04Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPID_DEBHA4.575e-2257.29Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
RBP2_BOVIN5.975e-2251.02E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIG_RAT5.975e-2253.13Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE5.975e-2253.13Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN5.975e-2253.13Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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