FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +VFFD+ IGG  AG++VM L+ + VPKTAENFRALCTGEKG G       YKG SFHR+I +FM Q             SIYG+ F DE+F LKH G
Sbjct:   13 RVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFG 109          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 52/97 (53.61%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVFFD+ I G PAGRIVM L+ D  P+TAENFRALCTGEKG G       YKG +FHR+I +FM Q             SIYG+ F DE+F+ +H G
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  405 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +VT KVFFD++IGG+P G+IV+GLFG+VVPKT +NF  L    +G GY G  FHR+I++FMIQ             SIYG  FEDE+F L+H G
Sbjct:   23 RVTDKVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYG 116          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 55/98 (56.12%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  414 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCTGE G G       +KG  FHRII +FMIQ             SIYG  F DE+F  KH G
Sbjct:    4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  399 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            Q +   +VFFD+ IG    GRIVM L  D+VP+TAENFRALCTG++G+GY  C FHR+I  FM Q             SIYG  F+DE+F L+H G
Sbjct:   13 QKRNLPRVFFDIRIGNADRGRIVMELRSDIVPRTAENFRALCTGDRGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEG 108          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 53/100 (53.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V  KV+FD+ +G K AGRIVM L+ D VP+TAENFRALCTGE+G G       YKG +FHR+I  FM Q             SIYG  F+DE+FV KH G
Sbjct:    2 VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  405 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            KVT  V+FD+  G +  GR+ +GLFG  VPKTAENFRAL TGEKG+GY+G  FHR+I +FMIQ             SIYGS F DE+F L H
Sbjct:   24 KVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSH 115          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 55/97 (56.70%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVFFD+ IG   AGR+VM LF DV P+TA NFRALCTGE G G       YKG +FHRII  FM Q             SIYGS FEDE+F LKH G
Sbjct:    5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTG 101          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +T K++FD+  G +  GRIV GL+G  VPKTAENF+ L TG+ GYGYKG +FHR+I  FMIQ             SIYGS F DE+F L+H
Sbjct:   32 ITDKIYFDIKQGEESLGRIVFGLYGKTVPKTAENFKQLATGQNGYGYKGSTFHRVIDQFMIQGGDFTNHDGTGGKSIYGSRFPDENFKLRH 122          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 54/96 (56.25%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  414 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +KVFFD+ IG   AGRIVM LF +V PKTAENFRALCTGEKG G       +KG  FHR+I DFM Q             SIYG  F DE+F LKH
Sbjct:    3 SKVFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKH 98          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PPIA_DICDI5.975e-2254.64Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
CYPH_LUPLU5.975e-2253.61Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYP6_CAEEL5.975e-2253.19Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CYP3_CAEEL7.804e-2256.12Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIE_SCHJA1.019e-2151.04Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CYPH_BRANA1.019e-2153.00Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIB_SCHPO1.331e-2155.43Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
CP19C_ARATH1.331e-2156.70Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIB2_RHIOR1.739e-2152.75Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
PPI2_SYNY31.739e-2156.25Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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