FC869310
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.748e-15 Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 2 Query: 179 AGTRSVSVSAAAADPNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD 481 A + VS S+ +R L+ P S PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG + F+D Sbjct: 39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGS-QIFSD 141
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.982e-15 Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA---------DIIKPG 562 PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + ++ ++I +G EG R A D++ PG Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPG 192
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15 Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 2 Query: 179 AGTRSVSVSAAAAD---PNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 A T+ ++ SA+ + P+R L+ P S PP +L G PGD+G+D GL +DPE N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 44 ATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 186
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15 Identity = 47/126 (37.30%), Postives = 68/126 (53.97%), Query Frame = 2 Query: 221 PNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P+R L+ P S PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + ++ +++ +G EG R A Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 177
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15 Identity = 44/109 (40.37%), Postives = 57/109 (52.29%), Query Frame = 2 Query: 236 WFPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGRR 538 WFP P LDGS PGDFGFDPLGL + PE +SEI HCRWAML G+ +PE L + W G+ Y + + T+ +E + I +AE +R Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15 Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 2 Query: 221 PNRPLWF-PCSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 538 P+RP + P S P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + ++ +++ +G+ EG R Sbjct: 52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15 Identity = 42/109 (38.53%), Postives = 54/109 (49.54%), Query Frame = 2 Query: 236 WFPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRR 538 W P P +LDGS PGDFGFD LGLG P L +SE++HCRWAML GI +PE L + W G+ Y T+ +E + I + E +R Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15 Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 2 Query: 224 NRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 +RPL+ P S +PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL K G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 53 DRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 177
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14 Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 538 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + ++ +++ +G+ EG R Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR 175
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14 Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2 Query: 254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ SW+ AG L+Y + + ++ ++I +G EG R A Sbjct: 45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIA 157 The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bpback to top |