FC869310

Overview
NameFC869310
Unique NameFC869310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:404..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  221 PNRPLWF-PCSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRR 538
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 177          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 179          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 177          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 49/139 (35.25%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  221 PNRPLWFPC-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGWAE------GRRWADIIKPG 562
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F            + E++ +G AE      G  + D + PG
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPG 203          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  188 RSVSVSAAAADPNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            + VS S+    PNR  +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178          
The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_ORYSI3.297e-1435.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC3.297e-1437.50Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2G_SOLLC4.306e-1436.61Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC4.306e-1436.61Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB26_ARATH4.306e-1435.25Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB25_TOBAC4.306e-1436.61Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL4.306e-1436.61Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC4.306e-1436.61Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL4.306e-1435.04Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_TOBAC4.306e-1436.61Chlorophyll a-b binding protein 16, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31010G12EF AbioticL1 Citrus clementina cDNA clone C31010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bp
CAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTATTTCCCGCTTCCG
TTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAG
AGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAA
GCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAG
TGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCATGCAGC
ACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGA
TCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAAT
CAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTC
ATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTA
CACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTG
TTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATT
ATAAAGCCAGGCTGTGTGAACACTGACCCGA
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