FC869310

Overview
NameFC869310
Unique NameFC869310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:404..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  185 TRSVSVSAAAADPNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            ++SVS  +    P+R  +  P S  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 167          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 56/161 (34.78%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  182 GTRSVSVSAAAA--DPNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWA--------DIIKPGCVNTDP 580
            G +SV+ S  +    P+R ++  P S  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A        D I PG  N DP
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPG-GNFDP 209          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 136          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  179 AGTRSVSVSAAAA------DPNRPLWF-PCST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAG 460
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL T  G+    P W+ AG
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAG 125          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  221 PNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            P+R L+  P S  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 134          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 174          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  221 PNRPLWF-PCSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 538
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  +           ++  +++ +G+ EG R
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR 175          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  221 PNRPLWF-PCST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            P+RP +  P S   P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG 135          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG 133          
The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_CUCSA4.306e-1434.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY5.624e-1434.78Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB27_TOBAC5.624e-1449.28Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2_CHLMO7.345e-1442.31Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE7.345e-1446.99Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_MAIZE7.345e-1436.28Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB215_PEA9.593e-1436.29Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB24_PETSP1.253e-1335.71Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_PINTH1.636e-1345.78Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI2.137e-1349.28Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC31010G12EF AbioticL1 Citrus clementina cDNA clone C31010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bp
CAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTATTTCCCGCTTCCG
TTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAG
AGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAA
GCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAG
TGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCATGCAGC
ACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGA
TCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAAT
CAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTC
ATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTA
CACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTG
TTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATT
ATAAAGCCAGGCTGTGTGAACACTGACCCGA
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