FC869310

Overview
NameFC869310
Unique NameFC869310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:404..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W  AG
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAG 136          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAG 136          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  176 TAGTRSVSVSAAAADPNRPLWFPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W       ++ G L+Y  + +         ++  +++ +G  EG R A
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 176          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  176 TAGTRSVSVSAAAAD---PNRPLW---FPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAG 460
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG 120          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  251 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAG 133          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  173 ATAGTRSVSVSAAAADPNRPLWFPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 415
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL 433          

HSP 2 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  224 NRPLWFPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 463
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ 74          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAG 460
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAG 136          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.532e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGELEYFTD 481
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG  + F+D
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS-QIFSD 139          
The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_PETSP4.761e-1347.83Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_PETSP6.218e-1347.83Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_HORVU2.363e-1232.37Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP2.363e-1233.93Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE3.086e-1239.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE5.264e-1243.66Chlorophyll a-b binding protein 48, chloroplastic ... [more]
LH18_EUGGR6.875e-1241.98Light-harvesting complex I LH38 proteins (Fragment... [more]
CB23_HORVU8.979e-1247.14Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.532e-1144.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31010G12EF AbioticL1 Citrus clementina cDNA clone C31010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bp
CAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTATTTCCCGCTTCCG
TTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAG
AGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAA
GCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAG
TGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCATGCAGC
ACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGA
TCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAAT
CAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTC
ATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTA
CACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTG
TTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATT
ATAAAGCCAGGCTGTGTGAACACTGACCCGA
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