FC872950
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22 Identity = 53/118 (44.92%), Postives = 80/118 (67.80%), Query Frame = 3 Query: 87 TPHKYEKKNIVSLA-PIAKPLAGKKLSKGTLGLVRLA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 434 T K E + + L PIA+PLA +KL+K L++ A A K L+ G+K+V K +RR KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+ KP+ Sbjct: 26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22 Identity = 51/133 (38.35%), Postives = 85/133 (63.91%), Query Frame = 3 Query: 114 IVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512 +V+ PIA+PLA ++L++ ++ A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V KP D+ + Y +E+V+ L Sbjct: 28 LVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV--KP---------HDEYQEAYDECLEEVQSL 149
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22 Identity = 44/102 (43.14%), Postives = 73/102 (71.57%), Query Frame = 3 Query: 114 IVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 419 +V+ PIA+PLA ++L++ ++ A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V Sbjct: 28 LVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_DROYA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila yakuba GN=NHP2 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 3 Query: 99 YEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 476 Y+ K ++ + IAKP+AGKKL+K LV+ A +HK L+ G+K+V +R+G G+C+ AG+++P+D++ H+P +CEE IPY Y S+ DL A KR T +LV +L E +++L A Sbjct: 30 YDDK-LIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKDLYDEVKEELSA 155
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_DROME (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila melanogaster GN=NHP2 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21 Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 3 Query: 99 YEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 476 Y+ K ++ + IAKP+AGKKL+K LV+ A +HK L+ G+K+V +R+G G+C+ AG+++P+D++ H+P +CEE IPY Y S+ DL A KR T +LV +L E +++L A Sbjct: 30 YDDK-LIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSA 155
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15 Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3 Query: 129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512 P A PLA LS+ + LV+ A +K LK+G E K++ RG + V+A + P++++ H+P+LCE+ ++PY++V SK L A RP + Q E +LK+ + EDV++L Sbjct: 8 PKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIA---------ASITQNEGSQLKSQIQKIKEDVEKL 126
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15 Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 3 Query: 117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491 +S+ P A PLA L++ L LV+ A+ +K L++G E K++ RG V+A + PI+++ H+P+LCE+ ++PY++V SK L A RP + T L Q + KL + L+ Sbjct: 1 MSVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15 Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 3 Query: 129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 428 P A PLA +L+K L LV+ AA +K L++G E K++ RG V+A + P+++I H+P+LCE+ ++PY++V SK+ L A RP V K Sbjct: 8 PKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIK 107
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15 Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 3 Query: 129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491 P A PLA L+ L L++ A+ +K LK+G E K++ RG V+A ++ PI+++ H+P+LCE+ ++PY++V SK L A RP V T + Q + KL + L+ Sbjct: 6 PKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15 Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512 P A PLA +L+ + L++ A + L++G E K++ RG + V+AG+ PI+++ H+P+LCE+ ++PY++V SK+ L A RP V T E +LK+ T + ++++ L Sbjct: 7 PKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTT---------NEGSQLKSQITSIQQEIERL 125 The following BLAST results are available for this feature:
BLAST of FC872950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872950 ID=FC872950; Name=FC872950; organism=Citrus clementina; type=EST; length=700bpback to top |