FC872950

Overview
NameFC872950
Unique NameFC872950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1284 contig Ccv1_Contig1284:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 53/118 (44.92%), Postives = 80/118 (67.80%), Query Frame = 3
Query:   87 TPHKYEKKNIVSLA-PIAKPLAGKKLSKGTLGLVRLA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 434
            T  K E + +  L  PIA+PLA +KL+K    L++ A A  K L+ G+K+V K +RR  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 51/133 (38.35%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  114 IVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512
            +V+  PIA+PLA ++L++     ++ A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP          D+ +  Y   +E+V+ L
Sbjct:   28 LVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV--KP---------HDEYQEAYDECLEEVQSL 149          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 44/102 (43.14%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  114 IVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 419
            +V+  PIA+PLA ++L++     ++ A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V
Sbjct:   28 LVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_DROYA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila yakuba GN=NHP2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 3
Query:   99 YEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 476
            Y+ K ++ +  IAKP+AGKKL+K    LV+ A +HK  L+ G+K+V   +R+G  G+C+ AG+++P+D++ H+P +CEE  IPY Y  S+ DL  A   KR T  +LV       +L  E +++L A
Sbjct:   30 YDDK-LIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKDLYDEVKEELSA 155          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_DROME (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila melanogaster GN=NHP2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 3
Query:   99 YEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 476
            Y+ K ++ +  IAKP+AGKKL+K    LV+ A +HK  L+ G+K+V   +R+G  G+C+ AG+++P+D++ H+P +CEE  IPY Y  S+ DL  A   KR T  +LV       +L  E +++L A
Sbjct:   30 YDDK-LIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSA 155          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512
            P A PLA   LS+  + LV+ A  +K LK+G  E  K++ RG   + V+A +  P++++ H+P+LCE+ ++PY++V SK  L  A    RP              + Q E  +LK+    + EDV++L
Sbjct:    8 PKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIA---------ASITQNEGSQLKSQIQKIKEDVEKL 126          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491
            +S+ P A PLA   L++  L LV+ A+ +K L++G  E  K++ RG     V+A +  PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     + T      L Q +  KL  +  L+
Sbjct:    1 MSVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 428
            P A PLA  +L+K  L LV+ AA +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIK 107          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491
            P A PLA   L+   L L++ A+ +K LK+G  E  K++ RG     V+A ++ PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     V T   +    Q +  KL  +  L+
Sbjct:    6 PKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512
            P A PLA  +L+   + L++ A  +  L++G  E  K++ RG   + V+AG+  PI+++ H+P+LCE+ ++PY++V SK+ L  A    RP     V T          E  +LK+  T + ++++ L
Sbjct:    7 PKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTT---------NEGSQLKSQITSIQQEIERL 125          
The following BLAST results are available for this feature:
BLAST of FC872950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NHP2_CAEEL2.125e-2244.92Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_PONAB3.625e-2238.35H/ACA ribonucleoprotein complex subunit 2 OS=Pongo... [more]
NHP2_HUMAN6.183e-2243.14H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
NHP2_DROYA8.928e-2140.16H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DROME8.928e-2140.16H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NH2L1_CAEEL1.927e-1533.59NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
SNU13_SCHPO2.516e-1533.6013 kDa ribonucleoprotein-associated protein OS=Sch... [more]
NH2L1_XENTR3.286e-1539.00NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
SNU13_USTMA5.605e-1533.8813 kDa ribonucleoprotein-associated protein OS=Ust... [more]
NH2L1_DROME7.321e-1531.25NHP2-like protein 1 homolog OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872950 ID=FC872950; Name=FC872950; organism=Citrus clementina; type=EST; length=700bp
TGAAAAATAAAACTCAAATCTCTGTTTCGTGCGATTCATTGATAACTGAA
CAAATAAAATGGGAAGCGACAGCTTAACCAGAGAGAACCCCTCATAAATA
TGAGAAGAAGAACATTGTTAGTCTTGCTCCCATTGCTAAGCCTCTAGCTG
GAAAGAAGCTCTCCAAAGGAACCCTCGGGCTTGTCCGTCTAGCTGCTGAG
CACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTATCCGCCG
TGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAATTGATG
TCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCCTACATT
TATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAAGAGGCC
AACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAACTAGGAC
AAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTAGAGGAT
GTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAAAGCCAA
CAAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCCCTTTCT
AGCTGAGTAATGTACTCTAGTTTTGTCGAATGTAAAATGCAGTTTGCCTC
TGTTGCATGAGATGGTTGGTTTTCATGTCTCATATGTGGGTATATTGCTT
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