FC872950

Overview
NameFC872950
Unique NameFC872950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1284 contig Ccv1_Contig1284:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_THEON (50S ribosomal protein L7Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  156 KLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKG-ELGQEEQDKLK 473
            +L++  L  V LA +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   + P   V ++ +P KG EL +E   K++
Sbjct:   14 ELAEKALEAVELARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVPAASVAII-EPGKGRELVEEIAMKVR 119          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_YEAST (13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae GN=SNU13 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 34/99 (34.34%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 425
            P A PLA   L++  L +V+ AA  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T
Sbjct:    6 PKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITT 104          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491
            P A PLA   L++  L +V+ A   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PYI+V SK  L  A    RP     V +        Q  Q K K +  L+
Sbjct:    6 PKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491
            P A PLA   L++  L +V+ +   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     V T        Q    K K +  L+
Sbjct:    6 PKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 37/121 (30.58%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 491
            P A PLA   L++  L +V+ A+  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    7 PKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_PYRKO (50S ribosomal protein L7Ae OS=Pyrococcus kodakaraensis GN=rpl7ae PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  153 KKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 473
            ++L++  L  V +A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPY+YV SK++L  A   + P   V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYVYVPSKKELGAAAGLEVPAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_PYRFU (50S ribosomal protein L7Ae OS=Pyrococcus furiosus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  153 KKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 473
            K+L++  L  V +A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K+K
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVK 119          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_NANEQ (50S ribosomal protein L7Ae OS=Nanoarchaeum equitans GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 383
            P  K    ++L+     LVR A E   +++G  E  K++ RG   L +IA N++P +++ H+P LCEE  +PY+YV SKE+L  A
Sbjct:    6 PYVKFEVPEELANKVYELVRKARETGKIRKGTNETTKAVERGQAKLVIIAENVNPPEIVMHLPALCEEKGVPYVYVPSKEELGKA 90          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 419
            P A PLA   L++  L +V+ +   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     V
Sbjct:    6 PKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASV 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_PYRHO (50S ribosomal protein L7Ae OS=Pyrococcus horikoshii GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  153 KKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 473
            K+L++  L  V +A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
The following BLAST results are available for this feature:
BLAST of FC872950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL7A_THEON8.949e-1336.4550S ribosomal protein L7Ae OS=Thermococcus onnurin... [more]
SNU13_YEAST1.169e-1234.3413 kDa ribonucleoprotein-associated protein OS=Sac... [more]
SNU13_YARLI1.169e-1233.0613 kDa ribonucleoprotein-associated protein OS=Yar... [more]
SNU13_DEBHA1.526e-1231.4013 kDa ribonucleoprotein-associated protein OS=Deb... [more]
SNU13_ASHGO1.526e-1230.5813 kDa ribonucleoprotein-associated protein OS=Ash... [more]
RL7A_PYRKO1.994e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus kodakarae... [more]
RL7A_PYRFU4.441e-1232.7150S ribosomal protein L7Ae OS=Pyrococcus furiosus ... [more]
RL7A_NANEQ4.441e-1238.8250S ribosomal protein L7Ae OS=Nanoarchaeum equitan... [more]
SNU13_CANAL5.801e-1234.0213 kDa ribonucleoprotein-associated protein OS=Can... [more]
RL7A_PYRHO9.894e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872950 ID=FC872950; Name=FC872950; organism=Citrus clementina; type=EST; length=700bp
TGAAAAATAAAACTCAAATCTCTGTTTCGTGCGATTCATTGATAACTGAA
CAAATAAAATGGGAAGCGACAGCTTAACCAGAGAGAACCCCTCATAAATA
TGAGAAGAAGAACATTGTTAGTCTTGCTCCCATTGCTAAGCCTCTAGCTG
GAAAGAAGCTCTCCAAAGGAACCCTCGGGCTTGTCCGTCTAGCTGCTGAG
CACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTATCCGCCG
TGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAATTGATG
TCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCCTACATT
TATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAAGAGGCC
AACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAACTAGGAC
AAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTAGAGGAT
GTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAAAGCCAA
CAAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCCCTTTCT
AGCTGAGTAATGTACTCTAGTTTTGTCGAATGTAAAATGCAGTTTGCCTC
TGTTGCATGAGATGGTTGGTTTTCATGTCTCATATGTGGGTATATTGCTT
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